7OHRy

Nog1-tap associated immature ribosomal particle population e from s. cerevisiae
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
225
structure length
225
Chain Sequence
MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH7 (212-222)S1 (2-5)TI18 (207-210)TIV1 (6-9)TIV2 (7-10)EMPTYTI1 (12-15)TIV8 (185-188)S2 (17-19)TI14 (192-195)TI4 (20-23)S14 (197-200)TI5 (66-69)S5 (64-66)S3 (24-26)AH1 (32-42)TII'1 (42-45)TI'1 (53-56)TIV3 (52-55)AH2 (58-62)S8 (108-110)AH5 (123-133)S7 (93-96)S6 (69-72)TI6 (73-76)AH3 (78-87)TI7 (89-92)TIV4 (99-102)AH4 (104-107)TIV5 (101-104)TI9 (147-150)TI8 (118-121)S9 (114-117)TIV6 (111-114)TI12 (155-158)S10 (136-139)TI'2 (142-145)TII1 (141-144)AH6 (167-177)TI10 (148-151)TIV7 (145-148)TI13 (162-165)TI'3 (187-190)TIV9 (186-189)TI15 (193-196)TIV10 (190-193)TI17 (200-203)S15 (203-207)S4 (48-50)S11 (152-155)S12 (158-161)Updating...
connected with : NaN
publication title Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors.
pubmed doi rcsb
molecule keywords 25S rRNA
molecule tags Ribosome
total genus 56
structure length 225
sequence length 225
ec nomenclature
pdb deposition date 2021-05-11
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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