The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
168
|
sequence length |
523
|
structure length |
523
|
Chain Sequence |
DSLYSLLVAELAGQRNRFDIALSNYVVQAQKTRDPGVSERAFRIAEYLGADQEALDTSLLWARSAPDNLDAQRAAAIQLARAGRYEESMVYMEKVLNGQGDTHFDFLALSAAETDPDTRAGLLQSFDHLLKKYPNNGQLLFGKALLLQQDGRPDEALTLLEDNSASRHEVAPLLLRSRLLQSMKRSDEALPLLKAGIKEHPDDKRVRLAYARLLVEQNRLDDAKAEFAGLVQQFPDDDDLRFSLALVCLEAQAWDEARIYLEELVERDSHVDAAHFNLGRLAEEQKDTARALDEYAQVGPGNDFLPAQLRQTDVLLKAGRVDEAAQRLDKARSEQPDYAIQLYLIEAEALSNNDQQEKAWQAIQEGLKQYPEDLNLLYTRSMLAEKRNDLAQMEKDLRFVIAREPDNAMALNALGYTLADRTTRYGEARELILKAHKLNPDDPAILDSMGWINYRQGKLADAERYLRQALQRYPDHEVAAHLGEVLWAQGRQGDARAIWREYLDKQPDSDVLRRTIKRLTGAE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
pubmed doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Pseudomonas aeruginosa (strain atcc 15692 / dsm 22644 / cip 104116 / jcm 14847 / lmg 12228 / 1c / prs 101 / pao1)
|
| molecule keywords |
TPR repeat-containing protein PA4667
|
| total genus |
168
|
| structure length |
523
|
| sequence length |
523
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2021-08-06 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
