7SCQ | Genus

Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	113
sequence length	349
structure length	349
Chain Sequence	PEEKFKIVRSVGEECIQEDELLNLLTKKPEPVCYDGFEPSGRMHIAQGVMKTISVNKLTSAGCRVKIWIADWFAKLNNKMGGDLKKIETVGRYLIEIWKAVGMDVEGGKVEFLWSSKEINARADEYWPLVLDIAQKNNLKRIIRCSQIMGRSEQDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSVFMEDEEAEVNVKIKKAYCPPKVVEGNPCLEYIKYLILPWFNEFTVERSADNGGNKTFKSYEELIADYESGELHPADLKPALSKSLNKILEPVREHFRKDSNAKELLKRVKAYRVTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 349 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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349 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein/rna
source organism	Phaseolus vulgaris
publication title	A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. pubmed doi rcsb
molecule keywords	Tyrosine--tRNA ligase
total genus	113
structure length	349
sequence length	349
chains with identical sequence	B
ec nomenclature	ec 6.1.1.1: tyrosine--tRNA ligase.
pdb deposition date	2021-09-28

Image from the rcsb pdb (www.rcsb.org)

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

7SCQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN