7VHEA

Crystal structure of the stx2a complexed with rrra peptide
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
297
structure length
283
Chain Sequence
REFTIDFSTQQSYVSSLNSIRTEISTPLEHISQGTTSVSVINHTPPGSYFAVDIRGLDVYQARFDHLRLIIEQNNLYVAGFVNTATNTFYRFSDFTHISVPGVTTVSMTTDSSYTTLQRVAALERSGMQISRHSLVSSYLALMEFSGNTMTRDASRAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTLNWGRISNVLPEYRGEDGVRVGRISFNNISAILGTVAVILNCHQPECQITGDRPVIKINNTLWESNTAAAFLNRKSQFLYTTGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
pubmed doi rcsb
molecule tags Toxin
source organism Escherichia coli
molecule keywords rRNA N-glycosylase
total genus 95
structure length 283
sequence length 297
ec nomenclature ec 3.2.2.22: rRNA N-glycosylase.
pdb deposition date 2021-09-22
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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