7WQOA

Structure of adeno-associated virus serotype php.eb
Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
525
structure length
525
Chain Sequence
DGVGSSSGNWHCDSQWLGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTDNNGVKTIANNLTSTVQVFTDSDYQLPYVLGSAHEGCLPPFPADVFMIPQYGYLTLNDGSQAVGRSSFYCLEYFPSQMLRTGNNFQFSYEFENVPFHSSYAHSQSLDRLMNPLIDQYLYYLSKTINGSGQNQQTLKFSVAGPSNMAVQGRNYIPGPSYRQQRVSTTVTQNNNSEFAWPGASSWALNGRNSLMNPGPAMASHKEGEDRFFPLSGSLIFGKQGTGRDNVDADKVMITNEEEIKTTNPVATESYGQVATNHQSDGTLAVPFKAQAQTGWVQNQGILPGMVWQDRDVYLQGPIWAKIPHTDGNFHPSPLMGGFGMKHPPPQILIKNTPVPADPPTAFNKDKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSNNVEFAVNTEGVYSEPRPIGTRYLTRNL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (468-471)TI1 (220-223)S2 (238-249)TI8 (367-370)S11 (387-388)TI4 (262-265)3H3 (289-291)TI5 (263-266)TIV2 (383-386)3H2 (270-272)S5 (307-328)S4 (275-284)TII1 (355-358)3H4 (397-399)TIV1 (327-330)TI6 (337-340)S6 (331-336)S7 (342-346)TI7 (347-350)O1 (360-362)S10 (383-384)S9 (376-381)S8 (371-373)TI9 (389-392)S14 (423-424)S13 (411-416)S17 (462-465)TI11 (437-440)S16 (445-449)TIV5 (455-458)S19 (488-490)TVIII3 (490-493)3H5 (493-495)O2 (497-499)S21 (514-517)TIV6 (501-504)TI14 (471-474)S1 (232-234)S3 (259-261)TI3 (261-264)AH1 (295-303)S12 (403-405)S15 (426-428)TIV3 (406-409)S18 (483-484)S20 (508-511)TVIII4 (502-505)TI13 (470-473)TIV4 (432-435)3H1 (253-255)TVIII1 (365-368)TI10 (431-434)TI12 (467-470)TIV8 (518-521)Updating...
connected with : NaN
molecule tags Virus
source organism Adeno-associated virus 9
publication title Structural basis for the neurotropic AAV9 and the engineered AAVPHP.eB recognition with cellular receptors.
pubmed doi rcsb
molecule keywords Capsid protein VP1
total genus 90
structure length 525
sequence length 525
ec nomenclature
pdb deposition date 2022-01-25
Image from the rcsb pdb (www.rcsb.org)
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