8AVXA

Cryo-em structure of drbphp in pfr state
Total Genus 91
50100150200250300350400450020406080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
500
structure length
480
Chain Sequence
ENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAGHLSLTVHRVGELLILEFEPTEHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGALGERLSVIRDLNRALTQSNA
50100150200250300350400450400300200100
020406080Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS10 (201-203)TI2 (28-31)TVIII1 (29-32)S5 (99-104)TI1 (23-26)TIV5 (94-97)TIV1 (24-27)S3 (50-55)TI5 (204-207)AH7 (210-218)S2 (40-45)TIV3 (46-49)AH1 (57-62)AH2 (66-69)S4 (72-73)AH3 (74-77)AH4 (81-88)TIV4 (90-93)TIV6 (105-109)S6 (110-118)S16 (282-291)S7 (121-128)AH5 (138-149)AH6 (153-168)TVIII2 (170-173)S8 (172-179)TIV23 (429-432)S20 (424-429)S9 (183-190)S11 (221-224)TII2 (192-195)S14 (244-245)TIV9 (226-229)TI7 (240-243)TII3 (198-201)TIV10 (234-237)TIV11 (239-242)S12 (232-235)TIV21 (420-423)S13 (238-239)AH8 (258-267)TI8 (248-251)TI9 (251-254)TIV12 (278-281)AH9 (299-342)TI10 (342-345)TI11 (347-350)TVIII4 (345-348)TI14 (354-357)TIV15 (355-358)TI15 (359-362)TIV16 (358-361)TI16 (360-363)TIV17 (371-374)S18 (375-380)S21 (437-442)AH10 (385-397)AH11 (408-411)S19 (402-405)TVIII5 (400-403)TVIII6 (405-408)TIV19 (413-416)TVIII7 (434-437)AH12 (465-474)S23 (478-480)O1 (36-38)S1 (34-35)TIV2 (45-48)TI3 (78-81)S15 (271-279)TIV7 (117-120)TI4 (179-182)S17 (367-372)TI18 (412-415)S22 (444-446)Updating...
connected with : NaN
molecule tags Transferase
source organism Deinococcus radiodurans r1
publication title Structural mechanism of signal transduction in a phytochrome histidine kinase.
pubmed doi rcsb
molecule keywords Bacteriophytochrome,Response regulator
total genus 91
structure length 480
sequence length 500
chains with identical sequence B
ec nomenclature ec 2.7.13.3: histidine kinase.
pdb deposition date 2022-08-27
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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