8QYWA

Human pyridoxine-5'-phosphate oxidase mutant r225h
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
216
structure length
208
Chain Sequence
EAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNHLHDRIVFRRLGPMTHRGEEDWLYERLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Oxidoreductase
source organism Homo sapiens
publication title Identification of the pyridoxal 5'-phosphate allosteric site in human pyridox(am)ine 5'-phosphate oxidase.
pubmed doi rcsb
molecule keywords Pyridoxine-5'-phosphate oxidase
total genus 57
structure length 208
sequence length 216
ec nomenclature
pdb deposition date 2023-10-26
Image from the rcsb pdb (www.rcsb.org)
1DNLA 1G76A 1G77A 1G78A 1NRGA 3HY8A 6H00A 8QYTA
similar chains in the Genus database (40% sequence similarity)
8ROSAAA
similar chains in the pdb database (40% sequence similarity)

  
#similar chains in the Genus database (40% sequence similarity)
1DNL A; 1G76 A; 1G77 A; 1G78 A; 1NRG A; 3HY8 A; 6H00 A; 8QYT A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
8ROS AAA;
How to cite
Application loaded.