8DBWD

E. coli atp synthase imaged in 10mm mgatp state3 "down" fo classified
Total Genus 140
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
460
structure length
460
Chain Sequence
MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMAPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL
50100150200250300350400450400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-9)S2 (12-16)TII'1 (9-12)TII3 (59-62)S5 (50-56)TVIII1 (18-21)S4 (36-46)TII1 (24-27)S3 (27-33)S6 (66-71)TIV2 (32-35)S9 (93-94)TIV3 (55-58)TII2 (47-50)S7 (76-79)S10 (105-108)TII5 (83-86)AH4 (213-233)TI1 (89-92)TIV4 (94-97)O2 (281-283)3H2 (116-118)TI4 (285-288)S17 (284-285)S11 (125-126)TII6 (140-143)S12 (139-140)AH1 (131-136)AH10 (384-400)TI9 (341-344)S13 (144-149)S18 (288-297)TII7 (150-153)3H5 (299-301)AH8 (323-328)AH2 (155-169)AH5 (244-255)S16 (236-241)S14 (174-181)AH3 (183-196)S15 (202-208)3H3 (199-201)AH6 (270-281)3H4 (256-258)TI3 (263-266)TIV5 (264-267)AH7 (306-312)TI5 (302-305)S19 (317-320)S20 (340-341)TI7 (335-338)TIV11 (443-446)TIV6 (330-333)TI8 (336-339)AH9 (351-377)TIV7 (345-348)TIV9 (347-350)AH11 (420-432)TI10 (378-381)TI17 (435-438)TI12 (404-407)TI13 (405-408)TI14 (407-410)AH12 (449-458)TIV10 (433-436)3H6 (440-443)3H1 (81-83)S8 (87-89)TI2 (208-211)TI6 (312-315)Updating...
connected with : NaN
publication title Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.
pubmed doi rcsb
molecule keywords ATP synthase subunit alpha
molecule tags Membrane protein
source organism Escherichia coli
total genus 140
structure length 460
sequence length 460
chains with identical sequence E, F
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 2022-06-14
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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