8II2A

Crystal structure of v30m-ttr in complex with bbm
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
115
structure length
115
Chain Sequence
CPLMVKVLDAVRGSPAINVAMHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (12-18)EMPTYTI1 (18-21)TIV2 (62-65)TI3 (36-39)TI2 (19-22)TI5 (60-63)S2 (23-24)S3 (28-35)TI4 (50-53)S5 (54-55)TI6 (61-64)AH1 (75-82)S6 (67-73)O1 (73-75)S8 (104-112)S7 (91-97)TI8 (112-115)TI7 (98-101)TIV3 (96-99)TVIII1 (10-13)TIV1 (25-28)S4 (41-49)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
pubmed doi rcsb
molecule keywords Transthyretin
total genus 25
structure length 115
sequence length 115
chains with identical sequence B
ec nomenclature
pdb deposition date 2023-02-24
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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