8IO2A

The rubisco assembly intermidate of arabidopsis thaliana rubisco accumulation factor 1 (atraf1) and rubisco large subunit (rbcl)
Total Genus 141
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
443
structure length
415
Chain Sequence
YKLTYYTPDYTPKDTDLLAAFRFSPQPGVPADEAGAAIAAESSTGDMDRYKGKCYHIEPVQGEENSYFAFIAYPLDLFEEGSVTNILTSIVGNVFGFKAIRSLRLEDIRFPVALVKTFQGPPHGIQVERDLLNKYGRPMLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFQRWRDRFLFVADAIHKSQTGEIKGHYLNVTAPTCEEMMKRAEFAKELGMPIIMHDFLTAGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQRNHGIHFRVLAKCLRLSGGDHLHSGTVVDKASTLGFVDLMREDHIEADRSRGVFFTQDWASMPGVLPVASGGIHVWHMPALVEIFGDDSVLQFGGHPWGNAPGATANRVALEACVQARNEGRDLYREGGDILSPELAAALDLW
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H2 (102-104)TIV2 (19-22)TII3 (106-109)AH9 (271-284)EMPTYTIV3 (20-23)TI1 (23-26)TI2 (29-32)AH1 (47-58)TII1 (42-45)3H1 (74-76)AH2 (110-118)S2 (80-86)TII2 (87-90)TIV5 (90-93)S3 (94-100)TIV14 (328-336)TIV6 (118-121)AH7 (244-257)S9 (287-291)3H3 (121-123)TIV13 (292-295)TI3 (124-127)S4 (127-136)S5 (166-170)TI4 (200-203)AH3 (139-143)TIV9 (171-174)AH5 (179-192)TIV8 (148-151)AH4 (152-159)TIV15 (376-379)TI5 (206-209)TIV10 (203-206)S6 (196-198)S7 (234-238)AH6 (211-224)TIV11 (207-210)TIV12 (226-231)AH10 (295-300)S8 (261-265)AH8 (266-269)TI6 (301-304)AH11 (308-318)S11 (322-324)AH12 (336-346)3H4 (355-357)S13 (363-364)TVIII1 (348-351)S12 (350-351)TI'1 (365-368)TIV17 (406-409)AH13 (384-391)TII'1 (391-394)TIV1 (17-20)TIV4 (58-61)S10 (305-306)S14 (372-376)S15 (396-399)AH14 (410-430)3H5 (381-383)TIV16 (392-395)S1 (33-41)Updating...
connected with : NaN
molecule tags Lyase
source organism Synechococcus sp. (strain atcc 27144 / pcc 6301 / saug 1402/1)
publication title Structural insight into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly.
pubmed doi rcsb
molecule keywords Ribulose bisphosphate carboxylase large chain
total genus 141
structure length 415
sequence length 443
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.1.1.39: ribulose-bisphosphate carboxylase.
pdb deposition date 2023-03-10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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