8KHDJ

The interface structure of omicron rbd binding to 5817 fab
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
108
structure length
108
Chain Sequence
ELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGPQAEDEADYYCTSRDSSGNHVIFGGGTKLTVLGQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.
pubmed doi rcsb
molecule tags Viral protein
source organism Homo sapiens
molecule keywords Heavy chain of 5817
total genus 13
structure length 108
sequence length 108
ec nomenclature
pdb deposition date 2023-08-21
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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