8Q6MA

Human sod1 low dose data collecton
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
153
structure length
153
Chain Sequence
ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-8)S8 (143-151)S2 (15-22)TII1 (24-27)TI5 (90-93)S4 (41-48)TI4 (80-83)TI1 (53-56)3H1 (57-60)TI2 (65-68)TI3 (73-76)TVIII1 (76-79)S6 (94-101)S5 (83-89)TII2 (112-115)TI6 (108-111)TII'1 (107-110)S7 (115-120)TI'1 (125-128)AH1 (133-137)TIV1 (101-104)TIV2 (137-140)S3 (29-36)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Homo sapiens
publication title Protein crosslinking as a therapeutic strategy for SOD1-related ALS
rcsb
molecule keywords Superoxide dismutase [Cu-Zn]
total genus 36
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature ec 1.15.1.1: superoxide dismutase.
pdb deposition date 2023-08-14
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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