8U3CA

Trpv1 in nanodisc bound with pi-br4 bound in conformation 2 (monomer)
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
304
structure length
284
Chain Sequence
SCIDTCNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTYNSLYSTCLELFKFTIGMGDLEFTFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Transient receptor potential cation channel subfamily V member 1
publication title Structural basis of TRPV1 modulation by endogenous bioactive lipids
doi rcsb
source organism Rattus norvegicus
total genus 106
structure length 284
sequence length 304
chains with identical sequence D
ec nomenclature
pdb deposition date 2023-09-07
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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