8W20C

Umb1 umbrella toxin particle
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
475
structure length
405
Chain Sequence
TVGDPTTDAKLDFTARLTIGTDYRSCSGALVDTQWVLTAASCFADDPNQPDTVAAGKPAQLTRATVGRADSNIANGYVREVVELVPHPERDMVLARLDKAIPDIAPVRLASDAPTAGTPLTAVGFGRTKDEWVPIQRHQGAFTVTSVTAGAVNVTGQGGDAICAGDTGGPLLQDKNGTLHLVGVNNRSMQGGCYGSETTSTDAIAAMSDADFVTQTVNRDLGTGNLSDLVASADFNSDGRTDVAAVLEDGSLHAFYAKLEYGREMVQIIGGDFNSDGNGDILNLYTGTATGILNKSKPMWHKTIKQVTRFKFNGRGLVAQWGDGNLYGYYTKVKMWPDATWTRLTGTADINDLTAVRDDGSLNWYAARKLWPDNTWTPMKRIIGGDIAVGGQSTLLLYGIAMRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Streptomyces umbrella toxin particles block hyphal growth of competing species
doi rcsb
molecule keywords Secreted protein
molecule tags Toxin
total genus 47
structure length 405
sequence length 475
chains with identical sequence E, G, I, K
ec nomenclature
pdb deposition date 2024-02-19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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