The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
228
|
sequence length |
682
|
structure length |
679
|
Chain Sequence |
SDLKSPDGNFLMHFSLEADGTPVYKLIYKGKDVIKASKLGFTLKNDNKSLLNDFKIEDTKTSSFDENWKPVWGEVSSIRNNYNELAVSLSQKETDRKMIIRFRLFDDGLGFRYEFPQQNNLIYFTIKEERTQFAMAGDHTAYWIPGDYDTQEYNYSTSKLSEIRGLMEKAYTKSQTSFSPTGVQTSLMMKSQDGLYINLHEAALINYSCMHLNLDDKNFVFESWLTPDSHGDKGKMQAPCKTPWRTVIVSDDARNILASKLTYNLNEPSKIQETSWIKPTKYVGVWWEMISGKSTWSYTDEFPSVQLGVTDFSKAKPNRKHGATTANVKRYIDFAAKNGFDAVLVEGWNEGWEDWIGHEKDYVFDFVTPYPDFDIKGLNEYAHAKKVKLIMHHETSGAVRNYERHMDAAYKLMKQYGYDAVKSGYVGNILPLGETHYSQWTNNHYQYAIEKAADYQIMVNAHEAVRPTGIARTYPNLIGNEAARGTQYQAFGNDRNNANHVTILPFTRLIGGPMDYTPGIFEMDVTNGSHVNATIANQLALYVTMYSPLQMAADFPENYERFADAFQFIKDVAVDWDDSRYLEAEPGQYITVARKAKGTDNWFLGNVNGETARVSNIDLGFLEKGKKYTAVIYADAKDANYKTNTQAYTIRKVVVTSNSKLSQFSASGGGYAISFYPVA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insights into alpha-(1->6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Flavobacterium johnsoniae (strain atcc 17061 / dsm 2064 / jcm 8514 / nbrc 14942 / ncimb 11054 / uw101)
|
| molecule keywords |
Candidate alpha-glucosidase Glycoside hydrolase family 97
|
| total genus |
228
|
| structure length |
679
|
| sequence length |
682
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2023-09-20 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
