8WG5M

Cryo-em structure of usp16 bound to h2ak119ub nucleosome
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
630
structure length
298
Chain Sequence
TVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGDEELKNKVKDYEKKKSMPSFVDRIFGGELTSMISLVHESFLDLSLPVLCSIQHCLYQFTRNEKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCVLYSLYGVVEHSGTMRSGHYTAYAKARTSKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome
rcsb
molecule keywords Ubiquitin carboxyl-terminal hydrolase 16
molecule tags Nuclear protein
source organism Homo sapiens
total genus 79
structure length 298
sequence length 630
ec nomenclature ec 3.4.19.12: ubiquitinyl hydrolase 1.
pdb deposition date 2023-09-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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