8X3HA

Crystal structure of iron-bound recombinant ovotransferrin n-lobe at 0.93 angstrom resolution
Total Genus 110

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
332
structure length
332
Chain Sequence
APPKSVIRWCTISSPEEKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQPVDNYKTCNWARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMR
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-11)TVIII1 (30-33)AH1 (14-26)EMPTYAH2 (42-51)TIV9 (297-300)TVIII6 (283-286)TIV8 (295-298)S2 (32-38)TI1 (27-30)AH8 (258-274)AH3 (61-68)S13 (251-255)S3 (56-59)TIV3 (121-124)TII3 (118-121)TVIa1 (69-72)S4 (74-84)TIV2 (70-73)TI18 (311-314)TI2 (84-87)S5 (87-89)S6 (91-99)TII1 (99-102)S10 (224-227)O1 (102-104)S11 (233-235)TI3 (105-108)TII2 (109-112)TI4 (106-109)AH5 (148-155)S7 (113-116)TVIII4 (201-204)TII4 (161-164)TI10 (183-186)AH4 (126-135)AH10 (322-330)TI5 (122-125)TI13 (228-231)TIV5 (156-159)3H2 (168-171)S8 (158-160)TI6 (171-174)TI7 (177-180)TI8 (178-181)TI9 (180-183)TI11 (186-189)AH6 (190-200)TIV10 (298-301)AH7 (211-217)S9 (205-209)TI17 (301-304)3H3 (221-223)TI12 (217-220)TI14 (235-238)3H4 (239-241)TI16 (275-278)3H5 (293-295)S14 (304-309)AH9 (316-320)TIV1 (52-55)3H1 (143-145)TIV6 (164-167)S12 (245-248)TVIII2 (136-139)Updating...
connected with : NaN
molecule tags Metal transport
source organism Gallus gallus
publication title Crystal structure of iron-bound ovotransferrin N-lobe at atomic resolution
rcsb
molecule keywords Ovotransferrin
total genus 110
structure length 332
sequence length 332
ec nomenclature
pdb deposition date 2023-11-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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