8YJY | Genus

Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	401
structure length	373
Chain Sequence	TTARNLPSGKKQRIADLLSQIIETLDLTKTQYANIESAYNGVGTFLSEGDDPLLQDAVIYPQGSVRLNTTVKPKNEEQYDIDLICYLPHATQADYTGVISAIRQRLESHKTYKTLLSELPRGFRINYAGDYHLDITPGRDHTGTAHPGQPLWVVDAQTAWKESNPSGYAEWFESSASVQPLRTILVKKLLNHIVQILKRHRDEWAAEQDEVRQRCRPISVIITTLACHAYNHIIADRRAYDNDLDILLDVLELMPDFIVSTQGAIHVNNPHMPEENFAEKWNRSEQDEGPQRSEAFYQWHAAAQATFNTIAASVGEDNLFLSLEDSFGKTPVDVVRQRLMEHMQSAREQGSLHLDKKTGGLIATAGVPKNTFY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 373 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

373 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Antiviral protein
source organism	Serratia marcescens
publication title	Phage defence system CBASS is regulated by a prokaryotic E2 enzyme that imitates the ubiquitin pathway. pubmed doi rcsb
molecule keywords	SmCdnG
total genus	96
structure length	373
sequence length	401
ec nomenclature
pdb deposition date	2024-03-03

Image from the rcsb pdb (www.rcsb.org)

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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8YJYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization