The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
57
|
sequence length |
291
|
structure length |
267
|
Chain Sequence |
APCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGNAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGPNAVSAVFLLKPQK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein/transferase
|
| molecule keywords |
DNA POLYMERASE PROCESSIVITY FACTOR
|
| publication title |
The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase.
pubmed doi rcsb |
| source organism |
Human herpesvirus 1
|
| total genus |
57
|
| structure length |
267
|
| sequence length |
291
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature | |
| pdb deposition date | 1999-12-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02282 | Herpes_UL42 | DNA polymerase processivity factor (UL42) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Box | Proliferating Cell Nuclear Antigen | Proliferating Cell Nuclear Antigen |
#chains in the Genus database with same CATH superfamily 3K4X A; 3GGR A; 2ZVW A; 3I2M X; 2OD8 A; 1W60 A; 2AVT A; 1ISQ A; 1AXC A; 3LX1 A; 3AIX A; 3HI8 A; 1U7B A; 1VYM A; 1RXZ A; 3FDS D; 2IZO B; 5H0T A; 3VKX A; 2HII C; 3G65 B; 2HII A; 2IX2 B; 1RWZ A; 5E0T A; 1B8H A; 2NTI B; 2ZVL A; 4YHR A; 3GPM A; 3P87 A; 1UD9 A; 5IY4 A; 3GGR B; 5E0U A; 4TR6 A; 1PLR A; 2ZVV A; 1GE8 A; 1UL1 A; 4CS5 A; 2IO4 A; 3AIX B; 3P91 A; 3V62 B; 1PLQ A; 3U5Z F; 5DAI A; 3U60 F; 5B7O A; 2HIK B; 5DA7 A; 5CFK A; 3A1J C; 3V61 B; 1DML A; 2Z0L A; 3F1W A; 4L6P A; 2HII B; 1B77 A; 3HSL X; 3A1J A; 3G65 C; 4ZTD A; 1YYP A; 1T6L A; 2IX2 C; 3G65 A; 4RJF A; 3V60 B; 5IWD A; 3AIZ C; 3TBL A; 5A6D A; 1IZ4 A; 5JNE D; 2IX2 A; 5AUJ A; 3AIZ A; 2ZVM A; 2IJX A; 4L60 A; 5IXA A; 2IO4 B; 1RXM A; 2ZVK A; 3LX2 A; 3WGW A; 1IZ5 A; 1VYJ A; 2AWA A; 1U76 A; 3P83 A; 2IZO C; 5E0V A; 3U61 F; 1SXJ F; 3A1J B; 4HK1 A; 2HIK C; 3FDS C; 3GPN A; 3IFV A; 5HAC A; 2NTI C; 1CZD A; 2HIK A; 4D2G A; 3A2F B; 2NTI A; 3GGR C; #chains in the Genus database with same CATH topology 3K4X A; 3GGR A; 2ZVW A; 3I2M X; 2OD8 A; 1W60 A; 2AVT A; 1ISQ A; 1AXC A; 3LX1 A; 3AIX A; 3HI8 A; 1U7B A; 1VYM A; 1RXZ A; 3FDS D; 2IZO B; 5H0T A; 3VKX A; 2HII C; 3G65 B; 2HII A; 2IX2 B; 1RWZ A; 5E0T A; 1B8H A; 2NTI B; 2ZVL A; 4YHR A; 3GPM A; 3P87 A; 1UD9 A; 5IY4 A; 3GGR B; 5E0U A; 4TR6 A; 1PLR A; 2ZVV A; 1GE8 A; 1UL1 A; 4CS5 A; 2IO4 A; 3AIX B; 3P91 A; 3V62 B; 1PLQ A; 3U5Z F; 5DAI A; 3U60 F; 5B7O A; 2HIK B; 5DA7 A; 5CFK A; 3A1J C; 3V61 B; 1DML A; 2Z0L A; 3F1W A; 4L6P A; 2HII B; 1B77 A; 3HSL X; 3A1J A; 3G65 C; 4ZTD A; 1YYP A; 1T6L A; 2IX2 C; 3G65 A; 4RJF A; 3V60 B; 5IWD A; 3AIZ C; 3TBL A; 5A6D A; 1IZ4 A; 5JNE D; 2IX2 A; 5AUJ A; 3AIZ A; 2ZVM A; 2IJX A; 4L60 A; 5IXA A; 2IO4 B; 1RXM A; 2ZVK A; 3LX2 A; 3WGW A; 1IZ5 A; 1VYJ A; 2AWA A; 1U76 A; 3P83 A; 2IZO C; 5E0V A; 3U61 F; 1SXJ F; 3A1J B; 4HK1 A; 2HIK C; 3FDS C; 3GPN A; 3IFV A; 5HAC A; 2NTI C; 1CZD A; 2HIK A; 4D2G A; 3A2F B; 2NTI A; 3GGR C; #chains in the Genus database with same CATH homology 3K4X A; 3GGR A; 2ZVW A; 3I2M X; 2OD8 A; 1W60 A; 2AVT A; 1ISQ A; 1AXC A; 3LX1 A; 3AIX A; 3HI8 A; 1U7B A; 1VYM A; 1RXZ A; 3FDS D; 2IZO B; 5H0T A; 3VKX A; 2HII C; 3G65 B; 2HII A; 2IX2 B; 1RWZ A; 5E0T A; 1B8H A; 2NTI B; 2ZVL A; 4YHR A; 3GPM A; 3P87 A; 1UD9 A; 5IY4 A; 3GGR B; 5E0U A; 4TR6 A; 1PLR A; 2ZVV A; 1GE8 A; 1UL1 A; 4CS5 A; 2IO4 A; 3AIX B; 3P91 A; 3V62 B; 1PLQ A; 3U5Z F; 5DAI A; 3U60 F; 5B7O A; 2HIK B; 5DA7 A; 5CFK A; 3A1J C; 3V61 B; 1DML A; 2Z0L A; 3F1W A; 4L6P A; 2HII B; 1B77 A; 3HSL X; 3A1J A; 3G65 C; 4ZTD A; 1YYP A; 1T6L A; 2IX2 C; 3G65 A; 4RJF A; 3V60 B; 5IWD A; 3AIZ C; 3TBL A; 5A6D A; 1IZ4 A; 5JNE D; 2IX2 A; 5AUJ A; 3AIZ A; 2ZVM A; 2IJX A; 4L60 A; 5IXA A; 2IO4 B; 1RXM A; 2ZVK A; 3LX2 A; 3WGW A; 1IZ5 A; 1VYJ A; 2AWA A; 1U76 A; 3P83 A; 2IZO C; 5E0V A; 3U61 F; 1SXJ F; 3A1J B; 4HK1 A; 2HIK C; 3FDS C; 3GPN A; 3IFV A; 5HAC A; 2NTI C; 1CZD A; 2HIK A; 4D2G A; 3A2F B; 2NTI A; 3GGR C;
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