The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
62
|
sequence length |
263
|
structure length |
250
|
Chain Sequence |
SEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWIGPHTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYVASRNGLFAVENFLTEE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Replication
|
| molecule keywords |
DNA polymerase processivity factor
|
| publication title |
A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions.
pubmed doi rcsb |
| source organism |
Human cytomegalovirus (strain ad169)
|
| total genus |
62
|
| structure length |
250
|
| sequence length |
263
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2016-03-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03325 | Herpes_PAP | Herpesvirus polymerase accessory protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Box | Proliferating Cell Nuclear Antigen | Proliferating Cell Nuclear Antigen |
#chains in the Genus database with same CATH superfamily 1VYJ A; 5H0T A; 2ZVV A; 3K4X A; 2NTI C; 2ZVM A; 3F1W A; 3G65 A; 3AIZ A; 5JNE D; 3G65 C; 1CZD A; 1UD9 A; 3AIZ C; 3VKX A; 1RXZ A; 3U5Z F; 3V60 B; 1SXJ F; 3G65 B; 5IXA A; 3TBL A; 3GPM A; 4HK1 A; 5DA7 A; 2Z0L A; 3AIX A; 2HIK A; 5DAI A; 3WGW A; 2HIK C; 2IJX A; 2NTI A; 3FDS D; 4L60 A; 1U76 A; 4RJF A; 3U61 F; 3AIX B; 5A6D A; 2HIK B; 3IFV A; 3GPN A; 5E0T A; 4CS5 A; 3HI8 A; 3FDS C; 2AWA A; 2NTI B; 3V62 B; 2OD8 A; 3A1J A; 3A1J C; 4D2G A; 3U60 F; 1RXM A; 1GE8 A; 4YHR A; 3V61 B; 5IY4 A; 1VYM A; 4L6P A; 1B77 A; 2ZVW A; 2AVT A; 3A1J B; 1YYP A; 1ISQ A; 1PLQ A; 2IO4 A; 5HAC A; 2IX2 A; 2IO4 B; 2HII A; 2IX2 C; 1IZ4 A; 2IZO C; 3P83 A; 2HII C; 3HSL X; 3P91 A; 3I2M X; 3GGR A; 4ZTD A; 3GGR C; 1RWZ A; 2IX2 B; 2IZO B; 1W60 A; 5IWD A; 2HII B; 3LX2 A; 1UL1 A; 4TR6 A; 3LX1 A; 2ZVL A; 3GGR B; 3A2F B; 1U7B A; 2ZVK A; 1T6L A; 5CFK A; 5B7O A; 1DML A; 1B8H A; 1PLR A; 5E0U A; 5AUJ A; 1AXC A; 1IZ5 A; 3P87 A; 5E0V A; #chains in the Genus database with same CATH topology 1VYJ A; 5H0T A; 2ZVV A; 3K4X A; 2NTI C; 2ZVM A; 3F1W A; 3G65 A; 3AIZ A; 5JNE D; 3G65 C; 1CZD A; 1UD9 A; 3AIZ C; 3VKX A; 1RXZ A; 3U5Z F; 3V60 B; 1SXJ F; 3G65 B; 5IXA A; 3TBL A; 3GPM A; 4HK1 A; 5DA7 A; 2Z0L A; 3AIX A; 2HIK A; 5DAI A; 3WGW A; 2HIK C; 2IJX A; 2NTI A; 3FDS D; 4L60 A; 1U76 A; 4RJF A; 3U61 F; 3AIX B; 5A6D A; 2HIK B; 3IFV A; 3GPN A; 5E0T A; 4CS5 A; 3HI8 A; 3FDS C; 2AWA A; 2NTI B; 3V62 B; 2OD8 A; 3A1J A; 3A1J C; 4D2G A; 3U60 F; 1RXM A; 1GE8 A; 4YHR A; 3V61 B; 5IY4 A; 1VYM A; 4L6P A; 1B77 A; 2ZVW A; 2AVT A; 3A1J B; 1YYP A; 1ISQ A; 1PLQ A; 2IO4 A; 5HAC A; 2IX2 A; 2IO4 B; 2HII A; 2IX2 C; 1IZ4 A; 2IZO C; 3P83 A; 2HII C; 3HSL X; 3P91 A; 3I2M X; 3GGR A; 4ZTD A; 3GGR C; 1RWZ A; 2IX2 B; 2IZO B; 1W60 A; 5IWD A; 2HII B; 3LX2 A; 1UL1 A; 4TR6 A; 3LX1 A; 2ZVL A; 3GGR B; 3A2F B; 1U7B A; 2ZVK A; 1T6L A; 5CFK A; 5B7O A; 1DML A; 1B8H A; 1PLR A; 5E0U A; 5AUJ A; 1AXC A; 1IZ5 A; 3P87 A; 5E0V A; #chains in the Genus database with same CATH homology 1VYJ A; 5H0T A; 2ZVV A; 3K4X A; 2NTI C; 2ZVM A; 3F1W A; 3G65 A; 3AIZ A; 5JNE D; 3G65 C; 1CZD A; 1UD9 A; 3AIZ C; 3VKX A; 1RXZ A; 3U5Z F; 3V60 B; 1SXJ F; 3G65 B; 5IXA A; 3TBL A; 3GPM A; 4HK1 A; 5DA7 A; 2Z0L A; 3AIX A; 2HIK A; 5DAI A; 3WGW A; 2HIK C; 2IJX A; 2NTI A; 3FDS D; 4L60 A; 1U76 A; 4RJF A; 3U61 F; 3AIX B; 5A6D A; 2HIK B; 3IFV A; 3GPN A; 5E0T A; 4CS5 A; 3HI8 A; 3FDS C; 2AWA A; 2NTI B; 3V62 B; 2OD8 A; 3A1J A; 3A1J C; 4D2G A; 3U60 F; 1RXM A; 1GE8 A; 4YHR A; 3V61 B; 5IY4 A; 1VYM A; 4L6P A; 1B77 A; 2ZVW A; 2AVT A; 3A1J B; 1YYP A; 1ISQ A; 1PLQ A; 2IO4 A; 5HAC A; 2IX2 A; 2IO4 B; 2HII A; 2IX2 C; 1IZ4 A; 2IZO C; 3P83 A; 2HII C; 3HSL X; 3P91 A; 3I2M X; 3GGR A; 4ZTD A; 3GGR C; 1RWZ A; 2IX2 B; 2IZO B; 1W60 A; 5IWD A; 2HII B; 3LX2 A; 1UL1 A; 4TR6 A; 3LX1 A; 2ZVL A; 3GGR B; 3A2F B; 1U7B A; 2ZVK A; 1T6L A; 5CFK A; 5B7O A; 1DML A; 1B8H A; 1PLR A; 5E0U A; 5AUJ A; 1AXC A; 1IZ5 A; 3P87 A; 5E0V A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
