2ZVVA

Crystal structure of proliferating cellular nuclear antigen 1 and short peptide from human p21
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
255
structure length
255
Chain Sequence
MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Proliferating cellular nuclear antigen 1
publication title Crystal structures of the Arabidopsis thaliana proliferating cell nuclear antigen 1 and 2 proteins complexed with the human p21 C-terminal segment
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 59
structure length 255
sequence length 255
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2zvvA00
2IZOC 1CZDA 1IZ5A 3AIXA 3G65C 2AWAA 3G65A 2HIKC 3P91A 3FDSD 3GGRB 3A1JB 3F1WA 3HSLX 2HIIC 4YHRA 2HIIA 1VYJA 4CS5A 1W60A 2IO4A 2IX2B 5E0VA 3AIZC 4L6PA 3AIZA 2ZVLA 4TR6A 3GPMA 5DA7A 5E0TA 3HI8A 5CFKA 3U61F 1UD9A 2HIKA 3I2MX 5DAIA 3LX1A 1PLQA 1B8HA 3V62B 2NTIB 3GPNA 1AXCA 3IFVA 3VKXA 3P87A 3P83A 3U5ZF 2AVTA 1UL1A 2ZVMA 3GGRC 5IWDA 3A1JC 3GGRA 1IZ4A 3A1JA 5H0TA 5E0UA 1GE8A 2IJXA 5JNED 5IY4A 2IZOB 3A2FB 2NTIC 3AIXB 4D2GA 5A6DA 1U76A 3G65B 2IX2C 1SXJF 2Z0LA 3V61B 1VYMA 1B77A 2IX2A 4HK1A 3WGWA 1RXZA 2HIKB 1T6LA 1DMLA 3U60F 1RXMA 3V60B 2HIIB 5AUJA 1RWZA 2IO4B 1ISQA 1YYPA 2OD8A 5HACA 1U7BA 4RJFA 3FDSC 1PLRA 5IXAA 5B7OA 2NTIA 4L60A 2ZVWA 3TBLA 3K4XA 4ZTDA 2ZVVA 2ZVKA 3LX2A
chains in the Genus database with same CATH superfamily
2IZOC 1CZDA 1IZ5A 3AIXA 3G65C 2AWAA 3G65A 2HIKC 3P91A 3FDSD 3GGRB 3A1JB 3F1WA 3HSLX 2HIIC 4YHRA 2HIIA 1VYJA 4CS5A 1W60A 2IO4A 2IX2B 5E0VA 3AIZC 4L6PA 3AIZA 2ZVLA 4TR6A 3GPMA 5DA7A 5E0TA 3HI8A 5CFKA 3U61F 1UD9A 2HIKA 3I2MX 5DAIA 3LX1A 1PLQA 1B8HA 3V62B 2NTIB 3GPNA 1AXCA 3IFVA 3VKXA 3P87A 3P83A 3U5ZF 2AVTA 1UL1A 2ZVMA 3GGRC 5IWDA 3A1JC 3GGRA 1IZ4A 3A1JA 5H0TA 5E0UA 1GE8A 2IJXA 5JNED 5IY4A 2IZOB 3A2FB 2NTIC 3AIXB 4D2GA 5A6DA 1U76A 3G65B 2IX2C 1SXJF 2Z0LA 3V61B 1VYMA 1B77A 2IX2A 4HK1A 3WGWA 1RXZA 2HIKB 1T6LA 1DMLA 3U60F 1RXMA 3V60B 2HIIB 5AUJA 1RWZA 2IO4B 1ISQA 1YYPA 2OD8A 5HACA 1U7BA 4RJFA 3FDSC 1PLRA 5IXAA 5B7OA 2NTIA 4L60A 2ZVWA 3TBLA 3K4XA 4ZTDA 2ZVVA 2ZVKA 3LX2A
chains in the Genus database with same CATH topology
2IZOC 1CZDA 1IZ5A 3AIXA 3G65C 2AWAA 3G65A 2HIKC 3P91A 3FDSD 3GGRB 3A1JB 3F1WA 3HSLX 2HIIC 4YHRA 2HIIA 1VYJA 4CS5A 1W60A 2IO4A 2IX2B 5E0VA 3AIZC 4L6PA 3AIZA 2ZVLA 4TR6A 3GPMA 5DA7A 5E0TA 3HI8A 5CFKA 3U61F 1UD9A 2HIKA 3I2MX 5DAIA 3LX1A 1PLQA 1B8HA 3V62B 2NTIB 3GPNA 1AXCA 3IFVA 3VKXA 3P87A 3P83A 3U5ZF 2AVTA 1UL1A 2ZVMA 3GGRC 5IWDA 3A1JC 3GGRA 1IZ4A 3A1JA 5H0TA 5E0UA 1GE8A 2IJXA 5JNED 5IY4A 2IZOB 3A2FB 2NTIC 3AIXB 4D2GA 5A6DA 1U76A 3G65B 2IX2C 1SXJF 2Z0LA 3V61B 1VYMA 1B77A 2IX2A 4HK1A 3WGWA 1RXZA 2HIKB 1T6LA 1DMLA 3U60F 1RXMA 3V60B 2HIIB 5AUJA 1RWZA 2IO4B 1ISQA 1YYPA 2OD8A 5HACA 1U7BA 4RJFA 3FDSC 1PLRA 5IXAA 5B7OA 2NTIA 4L60A 2ZVWA 3TBLA 3K4XA 4ZTDA 2ZVVA 2ZVKA 3LX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IZO C;  1CZD A;  1IZ5 A;  3AIX A;  3G65 C;  2AWA A;  3G65 A;  2HIK C;  3P91 A;  3FDS D;  3GGR B;  3A1J B;  3F1W A;  3HSL X;  2HII C;  4YHR A;  2HII A;  1VYJ A;  4CS5 A;  1W60 A;  2IO4 A;  2IX2 B;  5E0V A;  3AIZ C;  4L6P A;  3AIZ A;  2ZVL A;  4TR6 A;  3GPM A;  5DA7 A;  5E0T A;  3HI8 A;  5CFK A;  3U61 F;  1UD9 A;  2HIK A;  3I2M X;  5DAI A;  3LX1 A;  1PLQ A;  1B8H A;  3V62 B;  2NTI B;  3GPN A;  1AXC A;  3IFV A;  3VKX A;  3P87 A;  3P83 A;  3U5Z F;  2AVT A;  1UL1 A;  2ZVM A;  3GGR C;  5IWD A;  3A1J C;  3GGR A;  1IZ4 A;  3A1J A;  5H0T A;  5E0U A;  1GE8 A;  2IJX A;  5JNE D;  5IY4 A;  2IZO B;  3A2F B;  2NTI C;  3AIX B;  4D2G A;  5A6D A;  1U76 A;  3G65 B;  2IX2 C;  1SXJ F;  2Z0L A;  3V61 B;  1VYM A;  1B77 A;  2IX2 A;  4HK1 A;  3WGW A;  1RXZ A;  2HIK B;  1T6L A;  1DML A;  3U60 F;  1RXM A;  3V60 B;  2HII B;  5AUJ A;  1RWZ A;  2IO4 B;  1ISQ A;  1YYP A;  2OD8 A;  5HAC A;  1U7B A;  4RJF A;  3FDS C;  1PLR A;  5IXA A;  5B7O A;  2NTI A;  4L60 A;  2ZVW A;  3TBL A;  3K4X A;  4ZTD A;  2ZVV A;  2ZVK A;  3LX2 A; 
#chains in the Genus database with same CATH topology
 2IZO C;  1CZD A;  1IZ5 A;  3AIX A;  3G65 C;  2AWA A;  3G65 A;  2HIK C;  3P91 A;  3FDS D;  3GGR B;  3A1J B;  3F1W A;  3HSL X;  2HII C;  4YHR A;  2HII A;  1VYJ A;  4CS5 A;  1W60 A;  2IO4 A;  2IX2 B;  5E0V A;  3AIZ C;  4L6P A;  3AIZ A;  2ZVL A;  4TR6 A;  3GPM A;  5DA7 A;  5E0T A;  3HI8 A;  5CFK A;  3U61 F;  1UD9 A;  2HIK A;  3I2M X;  5DAI A;  3LX1 A;  1PLQ A;  1B8H A;  3V62 B;  2NTI B;  3GPN A;  1AXC A;  3IFV A;  3VKX A;  3P87 A;  3P83 A;  3U5Z F;  2AVT A;  1UL1 A;  2ZVM A;  3GGR C;  5IWD A;  3A1J C;  3GGR A;  1IZ4 A;  3A1J A;  5H0T A;  5E0U A;  1GE8 A;  2IJX A;  5JNE D;  5IY4 A;  2IZO B;  3A2F B;  2NTI C;  3AIX B;  4D2G A;  5A6D A;  1U76 A;  3G65 B;  2IX2 C;  1SXJ F;  2Z0L A;  3V61 B;  1VYM A;  1B77 A;  2IX2 A;  4HK1 A;  3WGW A;  1RXZ A;  2HIK B;  1T6L A;  1DML A;  3U60 F;  1RXM A;  3V60 B;  2HII B;  5AUJ A;  1RWZ A;  2IO4 B;  1ISQ A;  1YYP A;  2OD8 A;  5HAC A;  1U7B A;  4RJF A;  3FDS C;  1PLR A;  5IXA A;  5B7O A;  2NTI A;  4L60 A;  2ZVW A;  3TBL A;  3K4X A;  4ZTD A;  2ZVV A;  2ZVK A;  3LX2 A; 
#chains in the Genus database with same CATH homology
 2IZO C;  1CZD A;  1IZ5 A;  3AIX A;  3G65 C;  2AWA A;  3G65 A;  2HIK C;  3P91 A;  3FDS D;  3GGR B;  3A1J B;  3F1W A;  3HSL X;  2HII C;  4YHR A;  2HII A;  1VYJ A;  4CS5 A;  1W60 A;  2IO4 A;  2IX2 B;  5E0V A;  3AIZ C;  4L6P A;  3AIZ A;  2ZVL A;  4TR6 A;  3GPM A;  5DA7 A;  5E0T A;  3HI8 A;  5CFK A;  3U61 F;  1UD9 A;  2HIK A;  3I2M X;  5DAI A;  3LX1 A;  1PLQ A;  1B8H A;  3V62 B;  2NTI B;  3GPN A;  1AXC A;  3IFV A;  3VKX A;  3P87 A;  3P83 A;  3U5Z F;  2AVT A;  1UL1 A;  2ZVM A;  3GGR C;  5IWD A;  3A1J C;  3GGR A;  1IZ4 A;  3A1J A;  5H0T A;  5E0U A;  1GE8 A;  2IJX A;  5JNE D;  5IY4 A;  2IZO B;  3A2F B;  2NTI C;  3AIX B;  4D2G A;  5A6D A;  1U76 A;  3G65 B;  2IX2 C;  1SXJ F;  2Z0L A;  3V61 B;  1VYM A;  1B77 A;  2IX2 A;  4HK1 A;  3WGW A;  1RXZ A;  2HIK B;  1T6L A;  1DML A;  3U60 F;  1RXM A;  3V60 B;  2HII B;  5AUJ A;  1RWZ A;  2IO4 B;  1ISQ A;  1YYP A;  2OD8 A;  5HAC A;  1U7B A;  4RJF A;  3FDS C;  1PLR A;  5IXA A;  5B7O A;  2NTI A;  4L60 A;  2ZVW A;  3TBL A;  3K4X A;  4ZTD A;  2ZVV A;  2ZVK A;  3LX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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