1FWHA

Klebsiella aerogenes urease, c319y variant
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE
publication title Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 28
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1997-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1fwhA00
1A5NA 1FWAA 4GY7A 3QGKA 1EF2C 4CEUA 4Z42A 4EPEA 1FWFA 3QGAA 4H9MA 1FWHA 1FWIA 4EPDA 1KRBA 1KRAA 5A6TA 1EJVA 1IE7A 1UBPA 4EPBA 1S3TA 3UBPA 1E9YA 1EJTA 4FURA 4CEXA 1EJRA 5G4HA 4AC7A 1EJUA 5FSEA 1FWBA 1FWGA 2KAUA 4EP8A 5FSDA 3LA4A 2UBPA 1A5KA 1EJWA 4UBPA 4GOAA 1EJXA 1A5MA 1KRCA 2FVHA 1EJSA 4G7EA 1FWEA 1FWCA 4G7EB 1A5OA 1E9ZA 1A5LA 1FWJA 1FWDA
chains in the Genus database with same CATH superfamily
1A5NA 1FWAA 4GY7A 3QGKA 1EF2C 4CEUA 4Z42A 4EPEA 1FWFA 3QGAA 4H9MA 1FWHA 1FWIA 4EPDA 1KRBA 1KRAA 5A6TA 1EJVA 1IE7A 1UBPA 4EPBA 1S3TA 3UBPA 1E9YA 1EJTA 4FURA 4CEXA 1EJRA 5G4HA 4AC7A 1EJUA 5FSEA 1FWBA 1FWGA 2KAUA 4EP8A 5FSDA 3LA4A 2UBPA 1A5KA 1EJWA 4UBPA 4GOAA 1EJXA 1A5MA 1KRCA 2FVHA 1EJSA 4G7EA 1FWEA 1FWCA 4G7EB 1A5OA 1E9ZA 1A5LA 1FWJA 1FWDA
chains in the Genus database with same CATH topology
1A5NA 1FWAA 4GY7A 3QGKA 1EF2C 4CEUA 4Z42A 4EPEA 1FWFA 3QGAA 4H9MA 1FWHA 1FWIA 4EPDA 1KRBA 1KRAA 5A6TA 1EJVA 1IE7A 1UBPA 4EPBA 1S3TA 3UBPA 1E9YA 1EJTA 4FURA 4CEXA 1EJRA 5G4HA 4AC7A 1EJUA 5FSEA 1FWBA 1FWGA 2KAUA 4EP8A 5FSDA 3LA4A 2UBPA 1A5KA 1EJWA 4UBPA 4GOAA 1EJXA 1A5MA 1KRCA 2FVHA 1EJSA 4G7EA 1FWEA 1FWCA 4G7EB 1A5OA 1E9ZA 1A5LA 1FWJA 1FWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A5N A;  1FWA A;  4GY7 A;  3QGK A;  1EF2 C;  4CEU A;  4Z42 A;  4EPE A;  1FWF A;  3QGA A;  4H9M A;  1FWH A;  1FWI A;  4EPD A;  1KRB A;  1KRA A;  5A6T A;  1EJV A;  1IE7 A;  1UBP A;  4EPB A;  1S3T A;  3UBP A;  1E9Y A;  1EJT A;  4FUR A;  4CEX A;  1EJR A;  5G4H A;  4AC7 A;  1EJU A;  5FSE A;  1FWB A;  1FWG A;  2KAU A;  4EP8 A;  5FSD A;  3LA4 A;  2UBP A;  1A5K A;  1EJW A;  4UBP A;  4GOA A;  1EJX A;  1A5M A;  1KRC A;  2FVH A;  1EJS A;  4G7E A;  1FWE A;  1FWC A;  4G7E B;  1A5O A;  1E9Z A;  1A5L A;  1FWJ A;  1FWD A; 
#chains in the Genus database with same CATH topology
 1A5N A;  1FWA A;  4GY7 A;  3QGK A;  1EF2 C;  4CEU A;  4Z42 A;  4EPE A;  1FWF A;  3QGA A;  4H9M A;  1FWH A;  1FWI A;  4EPD A;  1KRB A;  1KRA A;  5A6T A;  1EJV A;  1IE7 A;  1UBP A;  4EPB A;  1S3T A;  3UBP A;  1E9Y A;  1EJT A;  4FUR A;  4CEX A;  1EJR A;  5G4H A;  4AC7 A;  1EJU A;  5FSE A;  1FWB A;  1FWG A;  2KAU A;  4EP8 A;  5FSD A;  3LA4 A;  2UBP A;  1A5K A;  1EJW A;  4UBP A;  4GOA A;  1EJX A;  1A5M A;  1KRC A;  2FVH A;  1EJS A;  4G7E A;  1FWE A;  1FWC A;  4G7E B;  1A5O A;  1E9Z A;  1A5L A;  1FWJ A;  1FWD A; 
#chains in the Genus database with same CATH homology
 1A5N A;  1FWA A;  4GY7 A;  3QGK A;  1EF2 C;  4CEU A;  4Z42 A;  4EPE A;  1FWF A;  3QGA A;  4H9M A;  1FWH A;  1FWI A;  4EPD A;  1KRB A;  1KRA A;  5A6T A;  1EJV A;  1IE7 A;  1UBP A;  4EPB A;  1S3T A;  3UBP A;  1E9Y A;  1EJT A;  4FUR A;  4CEX A;  1EJR A;  5G4H A;  4AC7 A;  1EJU A;  5FSE A;  1FWB A;  1FWG A;  2KAU A;  4EP8 A;  5FSD A;  3LA4 A;  2UBP A;  1A5K A;  1EJW A;  4UBP A;  4GOA A;  1EJX A;  1A5M A;  1KRC A;  2FVH A;  1EJS A;  4G7E A;  1FWE A;  1FWC A;  4G7E B;  1A5O A;  1E9Z A;  1A5L A;  1FWJ A;  1FWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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