1S13A

Human heme oxygenase oxidatition of alpha- and gamma-meso-phenylhemes
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
214
structure length
214
Chain Sequence
PQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Human heme oxygenase oxidation of 5- and 15-phenylhemes.
pubmed doi rcsb
source organism Homo sapiens
total genus 78
structure length 214
sequence length 214
chains with identical sequence B
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2004-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1s13A00
1XK3A 4WWZA 1ULXA 1YAFA 2RGZA 1RCWA 2Z68A 1OTVA 1WOWA 1XK1A 3B5OA 2ZVUA 1UDDA 1IX4A 4NY7A 4GPFA 3HLXA 2RD3A 3RM5A 1OZRA 3HNHA 1XJZA 1P3UA 4G99A 3IBXA 4G98A 4WD4A 1IW0A 4G8UA 3BJDA 3MOOA 1S13A 1NI6A 4GPCA 3HMLA 1VGIA 1IVJA 1WNWA 4G7TA 3I8RA 1OYLA 1WZGA 2QPPA 1WWMA 3B5PA 3K4FA 4G7LA 1P3TA 1WOVA 3CZYA 1Z72A 1OZWA 2QZCA 1TO9B 1OYKA 1WNXA 1UBBA 1N3UA 4RAJA 1SK7A 1IW1A 1V8XA 1OZLA 3DDEA 4WMHA 2E7EA 2A2OA 2Q4XA 3TGMA 2Q32A 1XK2A 3I9UA 1P3VA 1J02A 3MVUA 1S8CA 1DVGA 5BTQA 1WZFA 4G8WA 2DY5A 1TWNA 1N45A 1T5PA 2A2MA 4WX0A 4GOHA 3NO6A 4WWJA 3HOKA 1WE1A 2A6BA 1DVEA 2F2GA 1YAKA 4G8PA 2GM8A 4LQXA 1TO9A 1TYHA 1XK0A 2QCXA 1WZDA 1J2CA 1OTWA 2GM7A 1RTWA 1IRMA 1TWRA 4GPHA 1J77A 1WOXA 3OQLA 4G7PA 4G7UA 1IX3A 4FN6A 1WNVA 3I9TA 1OZEA 4MECA
chains in the Genus database with same CATH superfamily
1XK3A 4WWZA 1ULXA 1YAFA 2RGZA 1RCWA 2Z68A 1OTVA 1WOWA 1XK1A 3B5OA 2ZVUA 1UDDA 1IX4A 4NY7A 4GPFA 3HLXA 2RD3A 3RM5A 1OZRA 3HNHA 1XJZA 1P3UA 4G99A 3IBXA 4G98A 4WD4A 1IW0A 4G8UA 3BJDA 3MOOA 1S13A 1NI6A 4GPCA 3HMLA 1VGIA 1IVJA 1WNWA 4G7TA 3I8RA 1OYLA 1WZGA 2QPPA 1WWMA 3B5PA 3K4FA 4G7LA 1P3TA 1WOVA 3CZYA 1Z72A 1OZWA 2QZCA 1TO9B 1OYKA 1WNXA 1UBBA 1N3UA 4RAJA 1SK7A 1IW1A 1V8XA 1OZLA 3DDEA 4WMHA 2E7EA 2A2OA 2Q4XA 3TGMA 2Q32A 1XK2A 3I9UA 1P3VA 1J02A 3MVUA 1S8CA 1DVGA 5BTQA 1WZFA 4G8WA 2DY5A 1TWNA 1N45A 1T5PA 2A2MA 4WX0A 4GOHA 3NO6A 4WWJA 3HOKA 1WE1A 2A6BA 1DVEA 2F2GA 1YAKA 4G8PA 2GM8A 4LQXA 1TO9A 1TYHA 1XK0A 2QCXA 1WZDA 1J2CA 1OTWA 2GM7A 1RTWA 1IRMA 1TWRA 4GPHA 1J77A 1WOXA 3OQLA 4G7PA 2LCUA 4G7UA 1IX3A 4FN6A 1WNVA 3I9TA 1OZEA 4MECA
chains in the Genus database with same CATH topology
1XK3A 4WWZA 1ULXA 1YAFA 2RGZA 1RCWA 2Z68A 1OTVA 1WOWA 1XK1A 3B5OA 2ZVUA 1UDDA 1IX4A 4NY7A 4GPFA 3HLXA 2RD3A 3RM5A 1OZRA 3HNHA 1XJZA 1P3UA 4G99A 3IBXA 4G98A 4WD4A 1IW0A 4G8UA 3BJDA 3MOOA 1S13A 1NI6A 4GPCA 3HMLA 1VGIA 1IVJA 1WNWA 4G7TA 3I8RA 1OYLA 1WZGA 2QPPA 1WWMA 3B5PA 3K4FA 4G7LA 1P3TA 1WOVA 3CZYA 1Z72A 1OZWA 2QZCA 1TO9B 1OYKA 1WNXA 1UBBA 1N3UA 4RAJA 1SK7A 1IW1A 1V8XA 1OZLA 3DDEA 4WMHA 2E7EA 2A2OA 2Q4XA 3TGMA 2Q32A 1XK2A 3I9UA 1P3VA 1J02A 3MVUA 1S8CA 1DVGA 5BTQA 1WZFA 4G8WA 2DY5A 1TWNA 1N45A 1T5PA 2A2MA 4WX0A 4GOHA 3NO6A 4WWJA 3HOKA 1WE1A 2A6BA 1DVEA 2F2GA 1YAKA 4G8PA 2GM8A 4LQXA 1TO9A 1TYHA 1XK0A 2QCXA 1WZDA 1J2CA 1OTWA 2GM7A 1RTWA 1IRMA 1TWRA 4GPHA 1J77A 1WOXA 3OQLA 4G7PA 4G7UA 1IX3A 4FN6A 1WNVA 3I9TA 1OZEA 4MECA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1XK3 A;  4WWZ A;  1ULX A;  1YAF A;  2RGZ A;  1RCW A;  2Z68 A;  1OTV A;  1WOW A;  1XK1 A;  3B5O A;  2ZVU A;  1UDD A;  1IX4 A;  4NY7 A;  4GPF A;  3HLX A;  2RD3 A;  3RM5 A;  1OZR A;  3HNH A;  1XJZ A;  1P3U A;  4G99 A;  3IBX A;  4G98 A;  4WD4 A;  1IW0 A;  4G8U A;  3BJD A;  3MOO A;  1S13 A;  1NI6 A;  4GPC A;  3HML A;  1VGI A;  1IVJ A;  1WNW A;  4G7T A;  3I8R A;  1OYL A;  1WZG A;  2QPP A;  1WWM A;  3B5P A;  3K4F A;  4G7L A;  1P3T A;  1WOV A;  3CZY A;  1Z72 A;  1OZW A;  2QZC A;  1TO9 B;  1OYK A;  1WNX A;  1UBB A;  1N3U A;  4RAJ A;  1SK7 A;  1IW1 A;  1V8X A;  1OZL A;  3DDE A;  4WMH A;  2E7E A;  2A2O A;  2Q4X A;  3TGM A;  2Q32 A;  1XK2 A;  3I9U A;  1P3V A;  1J02 A;  3MVU A;  1S8C A;  1DVG A;  5BTQ A;  1WZF A;  4G8W A;  2DY5 A;  1TWN A;  1N45 A;  1T5P A;  2A2M A;  4WX0 A;  4GOH A;  3NO6 A;  4WWJ A;  3HOK A;  1WE1 A;  2A6B A;  1DVE A;  2F2G A;  1YAK A;  4G8P A;  2GM8 A;  4LQX A;  1TO9 A;  1TYH A;  1XK0 A;  2QCX A;  1WZD A;  1J2C A;  1OTW A;  2GM7 A;  1RTW A;  1IRM A;  1TWR A;  4GPH A;  1J77 A;  1WOX A;  3OQL A;  4G7P A;  4G7U A;  1IX3 A;  4FN6 A;  1WNV A;  3I9T A;  1OZE A;  4MEC A; 
#chains in the Genus database with same CATH topology
 1XK3 A;  4WWZ A;  1ULX A;  1YAF A;  2RGZ A;  1RCW A;  2Z68 A;  1OTV A;  1WOW A;  1XK1 A;  3B5O A;  2ZVU A;  1UDD A;  1IX4 A;  4NY7 A;  4GPF A;  3HLX A;  2RD3 A;  3RM5 A;  1OZR A;  3HNH A;  1XJZ A;  1P3U A;  4G99 A;  3IBX A;  4G98 A;  4WD4 A;  1IW0 A;  4G8U A;  3BJD A;  3MOO A;  1S13 A;  1NI6 A;  4GPC A;  3HML A;  1VGI A;  1IVJ A;  1WNW A;  4G7T A;  3I8R A;  1OYL A;  1WZG A;  2QPP A;  1WWM A;  3B5P A;  3K4F A;  4G7L A;  1P3T A;  1WOV A;  3CZY A;  1Z72 A;  1OZW A;  2QZC A;  1TO9 B;  1OYK A;  1WNX A;  1UBB A;  1N3U A;  4RAJ A;  1SK7 A;  1IW1 A;  1V8X A;  1OZL A;  3DDE A;  4WMH A;  2E7E A;  2A2O A;  2Q4X A;  3TGM A;  2Q32 A;  1XK2 A;  3I9U A;  1P3V A;  1J02 A;  3MVU A;  1S8C A;  1DVG A;  5BTQ A;  1WZF A;  4G8W A;  2DY5 A;  1TWN A;  1N45 A;  1T5P A;  2A2M A;  4WX0 A;  4GOH A;  3NO6 A;  4WWJ A;  3HOK A;  1WE1 A;  2A6B A;  1DVE A;  2F2G A;  1YAK A;  4G8P A;  2GM8 A;  4LQX A;  1TO9 A;  1TYH A;  1XK0 A;  2QCX A;  1WZD A;  1J2C A;  1OTW A;  2GM7 A;  1RTW A;  1IRM A;  1TWR A;  4GPH A;  1J77 A;  1WOX A;  3OQL A;  4G7P A;  2LCU A;  4G7U A;  1IX3 A;  4FN6 A;  1WNV A;  3I9T A;  1OZE A;  4MEC A; 
#chains in the Genus database with same CATH homology
 1XK3 A;  4WWZ A;  1ULX A;  1YAF A;  2RGZ A;  1RCW A;  2Z68 A;  1OTV A;  1WOW A;  1XK1 A;  3B5O A;  2ZVU A;  1UDD A;  1IX4 A;  4NY7 A;  4GPF A;  3HLX A;  2RD3 A;  3RM5 A;  1OZR A;  3HNH A;  1XJZ A;  1P3U A;  4G99 A;  3IBX A;  4G98 A;  4WD4 A;  1IW0 A;  4G8U A;  3BJD A;  3MOO A;  1S13 A;  1NI6 A;  4GPC A;  3HML A;  1VGI A;  1IVJ A;  1WNW A;  4G7T A;  3I8R A;  1OYL A;  1WZG A;  2QPP A;  1WWM A;  3B5P A;  3K4F A;  4G7L A;  1P3T A;  1WOV A;  3CZY A;  1Z72 A;  1OZW A;  2QZC A;  1TO9 B;  1OYK A;  1WNX A;  1UBB A;  1N3U A;  4RAJ A;  1SK7 A;  1IW1 A;  1V8X A;  1OZL A;  3DDE A;  4WMH A;  2E7E A;  2A2O A;  2Q4X A;  3TGM A;  2Q32 A;  1XK2 A;  3I9U A;  1P3V A;  1J02 A;  3MVU A;  1S8C A;  1DVG A;  5BTQ A;  1WZF A;  4G8W A;  2DY5 A;  1TWN A;  1N45 A;  1T5P A;  2A2M A;  4WX0 A;  4GOH A;  3NO6 A;  4WWJ A;  3HOK A;  1WE1 A;  2A6B A;  1DVE A;  2F2G A;  1YAK A;  4G8P A;  2GM8 A;  4LQX A;  1TO9 A;  1TYH A;  1XK0 A;  2QCX A;  1WZD A;  1J2C A;  1OTW A;  2GM7 A;  1RTW A;  1IRM A;  1TWR A;  4GPH A;  1J77 A;  1WOX A;  3OQL A;  4G7P A;  4G7U A;  1IX3 A;  4FN6 A;  1WNV A;  3I9T A;  1OZE A;  4MEC A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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