The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
98
|
sequence length |
256
|
structure length |
256
|
Chain Sequence |
IDTFSRTGPLMEAASYPAWTQQLIQDCSESKRRVVEHELYQRMRDNKLSAKVMRQYLIGGWPVVEQFALYMAQNLTKTRFARHPGEDMARRWLMRNIRVELNHADYWVHWSRAHGVTLEDLQAQQVPPELHALSHWCWHTSSADSLIVAIAATNYAIEGATGEWSALVCSNGIYAAAFPEEDRKRAMKWLKMHAQYDDAHPWEALEIIVTLAGLNPTKALQAELRQAICKSYDYMYLFLERCMQQEKTAVTRERLA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
TENA/THI-4 family protein
|
| publication title |
Microbial biosynthesis of medium-chain 1-alkenes by a nonheme iron oxidase.
pubmed doi rcsb |
| source organism |
Pseudomonas protegens pf-5
|
| total genus |
98
|
| structure length |
256
|
| sequence length |
256
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.-.-.-: |
| pdb deposition date | 2014-11-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14518 | Haem_oxygenas_2 | Iron-containing redox enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Heme Oxygenase; Chain A | Heme oxygenase-like |
#chains in the Genus database with same CATH superfamily 1S8C A; 1OZW A; 4G7T A; 1RTW A; 2RGZ A; 1YAK A; 1TO9 A; 4WWJ A; 4G8W A; 4LQX A; 1VGI A; 2DY5 A; 1UBB A; 2Z68 A; 2QCX A; 4WWZ A; 1DVG A; 1XK0 A; 2A2O A; 2ZVU A; 3HNH A; 1XK1 A; 4G7L A; 3HML A; 1J77 A; 3HOK A; 4G8U A; 1WZF A; 1WZG A; 1IW0 A; 2QPP A; 2Q32 A; 1SK7 A; 1N3U A; 1OYL A; 1OZL A; 2A6B A; 1YAF A; 4GPC A; 3CZY A; 1V8X A; 1N45 A; 2A2M A; 1S13 A; 3I9T A; 1DVE A; 2E7E A; 4G99 A; 4MEC A; 1J02 A; 3TGM A; 1IX4 A; 1TYH A; 2QZC A; 1TO9 B; 1XJZ A; 4GOH A; 1RCW A; 1NI6 A; 1XK3 A; 3MOO A; 4G7U A; 1TWR A; 2F2G A; 3I9U A; 2GM8 A; 3IBX A; 2RD3 A; 3DDE A; 1Z72 A; 4WX0 A; 3K4F A; 1J2C A; 2Q4X A; 1WWM A; 4NY7 A; 1P3V A; 1WOX A; 4G7P A; 1IRM A; 1OTW A; 1UDD A; 1T5P A; 1XK2 A; 4G8P A; 3MVU A; 1P3U A; 1WNX A; 1WNW A; 4RAJ A; 3RM5 A; 3OQL A; 1IVJ A; 1WE1 A; 1OZR A; 3B5P A; 4GPF A; 4WD4 A; 5BTQ A; 1OYK A; 1ULX A; 4G98 A; 1WOW A; 3NO6 A; 2GM7 A; 3I8R A; 1IW1 A; 1WOV A; 4FN6 A; 1OZE A; 1WNV A; 1WZD A; 1OTV A; 1TWN A; 3HLX A; 4GPH A; 3B5O A; 3BJD A; 1IX3 A; 1P3T A; 4WMH A; #chains in the Genus database with same CATH topology 1S8C A; 1OZW A; 4G7T A; 1RTW A; 2RGZ A; 1YAK A; 1TO9 A; 4WWJ A; 4G8W A; 4LQX A; 1VGI A; 2DY5 A; 1UBB A; 2Z68 A; 2QCX A; 4WWZ A; 1DVG A; 1XK0 A; 2A2O A; 2ZVU A; 3HNH A; 1XK1 A; 4G7L A; 3HML A; 1J77 A; 3HOK A; 4G8U A; 1WZF A; 1WZG A; 1IW0 A; 2QPP A; 2Q32 A; 1SK7 A; 1N3U A; 1OYL A; 1OZL A; 2LCU A; 2A6B A; 1YAF A; 4GPC A; 3CZY A; 1V8X A; 1N45 A; 2A2M A; 1S13 A; 3I9T A; 1DVE A; 2E7E A; 4G99 A; 4MEC A; 1J02 A; 3TGM A; 1IX4 A; 1TYH A; 2QZC A; 1TO9 B; 1XJZ A; 4GOH A; 1RCW A; 1NI6 A; 1XK3 A; 3MOO A; 4G7U A; 1TWR A; 2F2G A; 3I9U A; 2GM8 A; 3IBX A; 2RD3 A; 3DDE A; 1Z72 A; 4WX0 A; 3K4F A; 1J2C A; 2Q4X A; 1WWM A; 4NY7 A; 1P3V A; 1WOX A; 4G7P A; 1IRM A; 1OTW A; 1UDD A; 1T5P A; 1XK2 A; 4G8P A; 3MVU A; 1P3U A; 1WNX A; 1WNW A; 4RAJ A; 3RM5 A; 3OQL A; 1IVJ A; 1WE1 A; 1OZR A; 3B5P A; 4GPF A; 4WD4 A; 5BTQ A; 1OYK A; 1ULX A; 4G98 A; 1WOW A; 3NO6 A; 2GM7 A; 3I8R A; 1IW1 A; 1WOV A; 4FN6 A; 1OZE A; 1WNV A; 1WZD A; 1OTV A; 1TWN A; 3HLX A; 4GPH A; 3B5O A; 3BJD A; 1IX3 A; 1P3T A; 4WMH A; #chains in the Genus database with same CATH homology 1S8C A; 1OZW A; 4G7T A; 1RTW A; 2RGZ A; 1YAK A; 1TO9 A; 4WWJ A; 4G8W A; 4LQX A; 1VGI A; 2DY5 A; 1UBB A; 2Z68 A; 2QCX A; 4WWZ A; 1DVG A; 1XK0 A; 2A2O A; 2ZVU A; 3HNH A; 1XK1 A; 4G7L A; 3HML A; 1J77 A; 3HOK A; 4G8U A; 1WZF A; 1WZG A; 1IW0 A; 2QPP A; 2Q32 A; 1SK7 A; 1N3U A; 1OYL A; 1OZL A; 2A6B A; 1YAF A; 4GPC A; 3CZY A; 1V8X A; 1N45 A; 2A2M A; 1S13 A; 3I9T A; 1DVE A; 2E7E A; 4G99 A; 4MEC A; 1J02 A; 3TGM A; 1IX4 A; 1TYH A; 2QZC A; 1TO9 B; 1XJZ A; 4GOH A; 1RCW A; 1NI6 A; 1XK3 A; 3MOO A; 4G7U A; 1TWR A; 2F2G A; 3I9U A; 2GM8 A; 3IBX A; 2RD3 A; 3DDE A; 1Z72 A; 4WX0 A; 3K4F A; 1J2C A; 2Q4X A; 1WWM A; 4NY7 A; 1P3V A; 1WOX A; 4G7P A; 1IRM A; 1OTW A; 1UDD A; 1T5P A; 1XK2 A; 4G8P A; 3MVU A; 1P3U A; 1WNX A; 1WNW A; 4RAJ A; 3RM5 A; 3OQL A; 1IVJ A; 1WE1 A; 1OZR A; 3B5P A; 4GPF A; 4WD4 A; 5BTQ A; 1OYK A; 1ULX A; 4G98 A; 1WOW A; 3NO6 A; 2GM7 A; 3I8R A; 1IW1 A; 1WOV A; 4FN6 A; 1OZE A; 1WNV A; 1WZD A; 1OTV A; 1TWN A; 3HLX A; 4GPH A; 3B5O A; 3BJD A; 1IX3 A; 1P3T A; 4WMH A;
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