4G8UA

Rat heme oxygenase-1 in complex with heme and o2 with 13 hr illumination: laser off
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
213
structure length
213
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Discrimination between CO and O2 in Heme Oxygenase: Comparison of Static Structures and Dynamic Conformation Changes following CO Photolysis
pubmed doi rcsb
source organism Rattus norvegicus
total genus 91
structure length 213
sequence length 213
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2012-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 4g8uA00
1XK3A 1TYHA 1OZWA 1OTVA 3BJDA 3MVUA 1S8CA 3HOKA 1UBBA 4WMHA 4G7LA 3B5OA 5BTQA 1WE1A 1OYKA 4G7TA 1S13A 4G8WA 2QZCA 4MECA 1WZGA 1V8XA 4LQXA 4G99A 2RGZA 2DY5A 4FN6A 1WOWA 1XK1A 3CZYA 1XJZA 1VGIA 1TWRA 1ULXA 1WNWA 1Z72A 4WD4A 4G7PA 4GPCA 2A2OA 1IX3A 4G98A 2Q4XA 1J02A 1RTWA 1NI6A 1N3UA 1P3VA 2ZVUA 1WOXA 3IBXA 3I9TA 3HNHA 3TGMA 4GPFA 1J77A 2QCXA 3HLXA 4G8PA 2Q32A 1IVJA 2QPPA 1N45A 1UDDA 1WOVA 1OZEA 1P3UA 2F2GA 4NY7A 2A2MA 1DVEA 4RAJA 1TO9A 2E7EA 3I8RA 1WNXA 1TWNA 1YAFA 4WWJA 1IW1A 1WWMA 1WZDA 1DVGA 1IRMA 1IW0A 4WX0A 1TO9B 1OYLA 1XK0A 3HMLA 4GOHA 2GM7A 1SK7A 1YAKA 1T5PA 1OZRA 1RCWA 3B5PA 2RD3A 2A6BA 1WNVA 1WZFA 1XK2A 3MOOA 3RM5A 2GM8A 4WWZA 3DDEA 3I9UA 2Z68A 3OQLA 3K4FA 4GPHA 1IX4A 4G8UA 1OTWA 1J2CA 1P3TA 1OZLA 3NO6A 4G7UA
chains in the Genus database with same CATH superfamily
1XK3A 1TYHA 1OZWA 1OTVA 3BJDA 3MVUA 1S8CA 3HOKA 1UBBA 4WMHA 4G7LA 3B5OA 5BTQA 1WE1A 1OYKA 4G7TA 1S13A 4G8WA 2QZCA 4MECA 1WZGA 1V8XA 4LQXA 4G99A 2RGZA 2DY5A 4FN6A 1WOWA 1XK1A 3CZYA 1XJZA 1VGIA 1TWRA 1ULXA 1WNWA 1Z72A 4WD4A 4G7PA 4GPCA 2A2OA 1IX3A 4G98A 2Q4XA 1J02A 1RTWA 1NI6A 1N3UA 1P3VA 2ZVUA 1WOXA 3IBXA 3I9TA 3HNHA 3TGMA 4GPFA 1J77A 2QCXA 3HLXA 4G8PA 2Q32A 1IVJA 2QPPA 1N45A 1UDDA 1WOVA 1OZEA 1P3UA 2F2GA 4NY7A 2A2MA 1DVEA 4RAJA 1TO9A 2E7EA 3I8RA 1WNXA 1TWNA 1YAFA 4WWJA 1IW1A 1WWMA 1WZDA 1DVGA 1IRMA 1IW0A 4WX0A 1TO9B 1OYLA 1XK0A 3HMLA 4GOHA 2GM7A 1SK7A 1YAKA 1T5PA 1OZRA 1RCWA 3B5PA 2RD3A 2A6BA 1WNVA 1WZFA 1XK2A 3MOOA 3RM5A 2GM8A 4WWZA 3DDEA 3I9UA 2Z68A 3OQLA 3K4FA 4GPHA 1IX4A 4G8UA 2LCUA 1OTWA 1J2CA 1P3TA 1OZLA 3NO6A 4G7UA
chains in the Genus database with same CATH topology
1XK3A 1TYHA 1OZWA 1OTVA 3BJDA 3MVUA 1S8CA 3HOKA 1UBBA 4WMHA 4G7LA 3B5OA 5BTQA 1WE1A 1OYKA 4G7TA 1S13A 4G8WA 2QZCA 4MECA 1WZGA 1V8XA 4LQXA 4G99A 2RGZA 2DY5A 4FN6A 1WOWA 1XK1A 3CZYA 1XJZA 1VGIA 1TWRA 1ULXA 1WNWA 1Z72A 4WD4A 4G7PA 4GPCA 2A2OA 1IX3A 4G98A 2Q4XA 1J02A 1RTWA 1NI6A 1N3UA 1P3VA 2ZVUA 1WOXA 3IBXA 3I9TA 3HNHA 3TGMA 4GPFA 1J77A 2QCXA 3HLXA 4G8PA 2Q32A 1IVJA 2QPPA 1N45A 1UDDA 1WOVA 1OZEA 1P3UA 2F2GA 4NY7A 2A2MA 1DVEA 4RAJA 1TO9A 2E7EA 3I8RA 1WNXA 1TWNA 1YAFA 4WWJA 1IW1A 1WWMA 1WZDA 1DVGA 1IRMA 1IW0A 4WX0A 1TO9B 1OYLA 1XK0A 3HMLA 4GOHA 2GM7A 1SK7A 1YAKA 1T5PA 1OZRA 1RCWA 3B5PA 2RD3A 2A6BA 1WNVA 1WZFA 1XK2A 3MOOA 3RM5A 2GM8A 4WWZA 3DDEA 3I9UA 2Z68A 3OQLA 3K4FA 4GPHA 1IX4A 4G8UA 1OTWA 1J2CA 1P3TA 1OZLA 3NO6A 4G7UA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1XK3 A;  1TYH A;  1OZW A;  1OTV A;  3BJD A;  3MVU A;  1S8C A;  3HOK A;  1UBB A;  4WMH A;  4G7L A;  3B5O A;  5BTQ A;  1WE1 A;  1OYK A;  4G7T A;  1S13 A;  4G8W A;  2QZC A;  4MEC A;  1WZG A;  1V8X A;  4LQX A;  4G99 A;  2RGZ A;  2DY5 A;  4FN6 A;  1WOW A;  1XK1 A;  3CZY A;  1XJZ A;  1VGI A;  1TWR A;  1ULX A;  1WNW A;  1Z72 A;  4WD4 A;  4G7P A;  4GPC A;  2A2O A;  1IX3 A;  4G98 A;  2Q4X A;  1J02 A;  1RTW A;  1NI6 A;  1N3U A;  1P3V A;  2ZVU A;  1WOX A;  3IBX A;  3I9T A;  3HNH A;  3TGM A;  4GPF A;  1J77 A;  2QCX A;  3HLX A;  4G8P A;  2Q32 A;  1IVJ A;  2QPP A;  1N45 A;  1UDD A;  1WOV A;  1OZE A;  1P3U A;  2F2G A;  4NY7 A;  2A2M A;  1DVE A;  4RAJ A;  1TO9 A;  2E7E A;  3I8R A;  1WNX A;  1TWN A;  1YAF A;  4WWJ A;  1IW1 A;  1WWM A;  1WZD A;  1DVG A;  1IRM A;  1IW0 A;  4WX0 A;  1TO9 B;  1OYL A;  1XK0 A;  3HML A;  4GOH A;  2GM7 A;  1SK7 A;  1YAK A;  1T5P A;  1OZR A;  1RCW A;  3B5P A;  2RD3 A;  2A6B A;  1WNV A;  1WZF A;  1XK2 A;  3MOO A;  3RM5 A;  2GM8 A;  4WWZ A;  3DDE A;  3I9U A;  2Z68 A;  3OQL A;  3K4F A;  4GPH A;  1IX4 A;  4G8U A;  1OTW A;  1J2C A;  1P3T A;  1OZL A;  3NO6 A;  4G7U A; 
#chains in the Genus database with same CATH topology
 1XK3 A;  1TYH A;  1OZW A;  1OTV A;  3BJD A;  3MVU A;  1S8C A;  3HOK A;  1UBB A;  4WMH A;  4G7L A;  3B5O A;  5BTQ A;  1WE1 A;  1OYK A;  4G7T A;  1S13 A;  4G8W A;  2QZC A;  4MEC A;  1WZG A;  1V8X A;  4LQX A;  4G99 A;  2RGZ A;  2DY5 A;  4FN6 A;  1WOW A;  1XK1 A;  3CZY A;  1XJZ A;  1VGI A;  1TWR A;  1ULX A;  1WNW A;  1Z72 A;  4WD4 A;  4G7P A;  4GPC A;  2A2O A;  1IX3 A;  4G98 A;  2Q4X A;  1J02 A;  1RTW A;  1NI6 A;  1N3U A;  1P3V A;  2ZVU A;  1WOX A;  3IBX A;  3I9T A;  3HNH A;  3TGM A;  4GPF A;  1J77 A;  2QCX A;  3HLX A;  4G8P A;  2Q32 A;  1IVJ A;  2QPP A;  1N45 A;  1UDD A;  1WOV A;  1OZE A;  1P3U A;  2F2G A;  4NY7 A;  2A2M A;  1DVE A;  4RAJ A;  1TO9 A;  2E7E A;  3I8R A;  1WNX A;  1TWN A;  1YAF A;  4WWJ A;  1IW1 A;  1WWM A;  1WZD A;  1DVG A;  1IRM A;  1IW0 A;  4WX0 A;  1TO9 B;  1OYL A;  1XK0 A;  3HML A;  4GOH A;  2GM7 A;  1SK7 A;  1YAK A;  1T5P A;  1OZR A;  1RCW A;  3B5P A;  2RD3 A;  2A6B A;  1WNV A;  1WZF A;  1XK2 A;  3MOO A;  3RM5 A;  2GM8 A;  4WWZ A;  3DDE A;  3I9U A;  2Z68 A;  3OQL A;  3K4F A;  4GPH A;  1IX4 A;  4G8U A;  2LCU A;  1OTW A;  1J2C A;  1P3T A;  1OZL A;  3NO6 A;  4G7U A; 
#chains in the Genus database with same CATH homology
 1XK3 A;  1TYH A;  1OZW A;  1OTV A;  3BJD A;  3MVU A;  1S8C A;  3HOK A;  1UBB A;  4WMH A;  4G7L A;  3B5O A;  5BTQ A;  1WE1 A;  1OYK A;  4G7T A;  1S13 A;  4G8W A;  2QZC A;  4MEC A;  1WZG A;  1V8X A;  4LQX A;  4G99 A;  2RGZ A;  2DY5 A;  4FN6 A;  1WOW A;  1XK1 A;  3CZY A;  1XJZ A;  1VGI A;  1TWR A;  1ULX A;  1WNW A;  1Z72 A;  4WD4 A;  4G7P A;  4GPC A;  2A2O A;  1IX3 A;  4G98 A;  2Q4X A;  1J02 A;  1RTW A;  1NI6 A;  1N3U A;  1P3V A;  2ZVU A;  1WOX A;  3IBX A;  3I9T A;  3HNH A;  3TGM A;  4GPF A;  1J77 A;  2QCX A;  3HLX A;  4G8P A;  2Q32 A;  1IVJ A;  2QPP A;  1N45 A;  1UDD A;  1WOV A;  1OZE A;  1P3U A;  2F2G A;  4NY7 A;  2A2M A;  1DVE A;  4RAJ A;  1TO9 A;  2E7E A;  3I8R A;  1WNX A;  1TWN A;  1YAF A;  4WWJ A;  1IW1 A;  1WWM A;  1WZD A;  1DVG A;  1IRM A;  1IW0 A;  4WX0 A;  1TO9 B;  1OYL A;  1XK0 A;  3HML A;  4GOH A;  2GM7 A;  1SK7 A;  1YAK A;  1T5P A;  1OZR A;  1RCW A;  3B5P A;  2RD3 A;  2A6B A;  1WNV A;  1WZF A;  1XK2 A;  3MOO A;  3RM5 A;  2GM8 A;  4WWZ A;  3DDE A;  3I9U A;  2Z68 A;  3OQL A;  3K4F A;  4GPH A;  1IX4 A;  4G8U A;  1OTW A;  1J2C A;  1P3T A;  1OZL A;  3NO6 A;  4G7U A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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