The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
150
|
sequence length |
473
|
structure length |
455
|
Chain Sequence |
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription/dna
|
| molecule keywords |
ME DNA transferred strand
|
| publication title |
Evidence for "unseen" Transposase--DNA contacts
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
150
|
| structure length |
455
|
| sequence length |
473
|
| ec nomenclature | |
| pdb deposition date | 2002-09-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01609 | DDE_Tnp_1 | Transposase DDE domain |
| A | PF02281 | Dimer_Tnp_Tn5 | Transposase Tn5 dimerisation domain |
| A | PF14706 | Tnp_DNA_bind | Transposase DNA-binding |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Tn5 transposase; domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Transferase Inhibitor Protein From Tn5; Chain A, domain2 | Transferase Inhibitor Protein From Tn5; Chain | ||
| Alpha Beta | Alpha-Beta Complex | Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | Transposase Inhibitor Protein From Tn5; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 1MM8 A; 3ECP A; 1B7E A; 1MUH A; 1MUS A; 4DM0 A; #chains in the Genus database with same CATH topology 4GG2 A; 1TXU A; 1HK4 A; 2BXQ A; 3NMU A; 3V09 A; 1E7E A; 4LA0 A; 3V08 A; 5IIH A; 3NVI A; 2BXL A; 3JQZ A; 3FNM A; 1HK3 A; 3SIU B; 1TF0 A; 3TDL A; 2BXB A; 2AJE A; 4F5V A; 3B9M A; 4Z9O A; 4ZBQ A; 4F5U A; 2DBX A; 4G03 A; 4TQ1 A; 4ZUX V; 1MIV A; 2V36 A; 3WHQ A; 3FWB C; 4I9O A; 5IFO A; 1BM0 A; 4TQ0 A; 3SIV B; 5D7G A; 3LU7 A; 2BXI A; 4OR0 A; 2BXH A; 3NVM A; 1VFI A; 1E7G A; 2LXT A; 1FOU A; 4JK4 A; 2KBZ A; 3A73 A; 3VQI A; 1BJ5 A; 2VDB A; 5GIN A; 3B9L A; 1LOT A; 1H5W A; 2LQH A; 3GQU A; 4GDK B; 3MHH B; 2BXO A; 2E0Y A; 4FJC B; 1MA9 A; 5GIP A; 3H37 A; 2QM6 A; 2XVU A; 4LB9 A; 2XVQ A; 2DYM A; 3NVK A; 3WHR A; 1JNB A; 1HA2 A; 1HK5 A; 3KJL A; 2ROH A; 2LOQ A; 1UOR A; 4D7X A; 2BXD A; 5GIO A; 1E7C A; 5HOZ A; 5IJE A; 4N3Z A; 2Z8K A; 4OT2 A; 2XVV A; 1MM8 A; 2VUF A; 4BY9 C; 4PO0 A; 2OZB B; 2OT3 A; 4ZBR A; 4K2C A; 2XW0 A; 5GHK A; 1BKE A; 2JUH A; 3A75 A; 4L8U A; 3CX9 A; 1H9Z A; 3M99 C; 2DG5 A; 4F5S A; 2BX8 A; 1HK2 A; 4L9Q A; 4ZC6 A; 4ZBK A; 3WHS A; 2BXE A; 2DBU A; 5ID7 A; 2XMO A; 2EFH A; 4LB2 A; 4G04 A; 2BXF A; 3V03 A; 2BXC A; 4GDX A; 2QHB A; 3PLA A; 2BXG A; 1GNI A; 3GA9 L; 3MHS B; 1HK1 A; 1IJG A; 1E7B A; 3SQJ A; 5ID9 A; 2EFE A; 1LNS A; 2QMC A; 4MBE C; 4DM0 A; 2BXN A; 4W4U B; 1J78 A; 2DYO A; 4OTT A; 1O9X A; 1J7E A; 2K0N A; 4DHX B; 2VUE A; 1N5U A; 2EFC A; 4F5T A; 1MUS A; 1KDX A; 2BXM A; 3LU8 A; 3BPJ A; 2LQI A; 4ZCG A; 4FK5 B; 4Z69 A; 4FIP B; 1E78 A; 4E99 A; 2BXP A; 2YDF A; 2BXA A; 4WA6 B; 2E0X A; 5IJ5 A; 2BXK A; 1E7H A; 3JRY A; 1AO6 A; 2Z8I A; 4L9K A; 4S1Y A; 4N0F D; 1KW2 A; 4GDL B; 5B5T A; 2EFD A; 4N0U D; 2XVW A; 3UIV A; 2XSI A; 5IIU A; 4IW1 A; 4J2V A; 4K71 A; 5DBY A; 4M70 B; 4NAW B; 1KXP D; 2GUT A; 2CKX A; 2I2Z A; 4OTU A; 4EMX A; 1E7I A; 2NNW A; 4HGM B; 4G01 A; 3ICX A; 4LUF A; 4IW2 A; 3KIK A; 1GNJ A; 3GQX A; 5FUO A; 5IIX A; 3ECP A; 2LXS A; 2AGH B; 2I30 A; 5IJF A; 1B7E A; 3H3A A; 4BKE A; 1NT2 B; 1MUH A; 4LUH A; 3G9K D; 3LU6 A; 2XW1 A; 3W1S A; 5BPK A; 1E7A A; 1E7F A; 2Z8J A; 1VZS A; 1MIY A; 4HGK A; 5DQF A; 1SB0 A; 4C31 B; 2NQO A; 2KWF A; 2DBW A; 1MIW A; 3FWC C; #chains in the Genus database with same CATH homology 1MM8 A; 3ECP A; 1B7E A; 1MUH A; 1MUS A; 4DM0 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
