2A5GB

Cholera toxin a1 subunit bound to arf6(q67l)
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
187
structure length
185
Chain Sequence
NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDDQDVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural basis for the activation of cholera toxin by human ARF6-GTP.
pubmed doi rcsb
molecule tags Protein transport/transferase
source organism Homo sapiens
molecule keywords ADP-ribosylation factor 6
total genus 56
structure length 185
sequence length 187
ec nomenclature ec 2.4.2.36: NAD(+)--diphthamide ADP-ribosyltransferase.
pdb deposition date 2005-06-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.210.10 Alpha Beta Alpha-Beta Complex Heat-Labile Enterotoxin; Chain A Heat-Labile Enterotoxin, subunit A 2a5gB00
2VSEA 4Z9CA 1LTBA 2A5FB 1S5BA 1LTAA 1S5CA 1XTCA 1LTIA 2A5DB 1HTLA 2CB4A 4K6LG 1PRTA 1LTSA 1S5FA 1LT4A 1LTTA 2A5GB 1LTGA 1BCPA 1LT3A 1TIIA 2VSAA 1S5DA 1S5EA 2CB6A 1PTOA
chains in the Genus database with same CATH superfamily
2VSEA 4Z9CA 1LTBA 2A5FB 1S5BA 1LTAA 1S5CA 1XTCA 1LTIA 2A5DB 1HTLA 2CB4A 4K6LG 1PRTA 1LTSA 1S5FA 1LT4A 1LTTA 2A5GB 1LTGA 1BCPA 1LT3A 1TIIA 2VSAA 1S5DA 1S5EA 2CB6A 1PTOA
chains in the Genus database with same CATH topology
2VSEA 4Z9CA 1LTBA 2A5FB 1S5BA 1LTAA 1S5CA 1XTCA 1LTIA 2A5DB 1HTLA 2CB4A 4K6LG 1PRTA 1LTSA 1S5FA 1LT4A 1LTTA 2A5GB 1LTGA 1BCPA 1LT3A 1TIIA 2VSAA 1S5DA 1S5EA 2CB6A 1PTOA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2VSE A;  4Z9C A;  1LTB A;  2A5F B;  1S5B A;  1LTA A;  1S5C A;  1XTC A;  1LTI A;  2A5D B;  1HTL A;  2CB4 A;  4K6L G;  1PRT A;  1LTS A;  1S5F A;  1LT4 A;  1LTT A;  2A5G B;  1LTG A;  1BCP A;  1LT3 A;  1TII A;  2VSA A;  1S5D A;  1S5E A;  2CB6 A;  1PTO A; 
#chains in the Genus database with same CATH topology
 2VSE A;  4Z9C A;  1LTB A;  2A5F B;  1S5B A;  1LTA A;  1S5C A;  1XTC A;  1LTI A;  2A5D B;  1HTL A;  2CB4 A;  4K6L G;  1PRT A;  1LTS A;  1S5F A;  1LT4 A;  1LTT A;  2A5G B;  1LTG A;  1BCP A;  1LT3 A;  1TII A;  2VSA A;  1S5D A;  1S5E A;  2CB6 A;  1PTO A; 
#chains in the Genus database with same CATH homology
 2VSE A;  4Z9C A;  1LTB A;  2A5F B;  1S5B A;  1LTA A;  1S5C A;  1XTC A;  1LTI A;  2A5D B;  1HTL A;  2CB4 A;  4K6L G;  1PRT A;  1LTS A;  1S5F A;  1LT4 A;  1LTT A;  2A5G B;  1LTG A;  1BCP A;  1LT3 A;  1TII A;  2VSA A;  1S5D A;  1S5E A;  2CB6 A;  1PTO A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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