2B26A

The crystal structure of the protein complex of yeast hsp40 sis1 and hsp70 ssa1
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
170
structure length
157
Chain Sequence
ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/protein transport
molecule keywords SIS1 protein
publication title Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 27
structure length 157
sequence length 170
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2b26A01
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2b26A02
4J80A 1C3GA 1EB0A 3I38A 3NXZA 2Q2GA 3AGYA 1XAOA 1NLTA 3AGXA 3L9ZA 4L3KA 3LZ8A 3NY0A 1EARA 3AGZA 3TJ8A 1GMVA 1GMWD 2QLDA 3TJ9A 3LA0A 3TJAA 1GMWA 1GMUA 2B26A
chains in the Genus database with same CATH superfamily
4J80A 3AKOB 1C3GA 1EB0A 3I38A 3NXZA 2Q2GA 3AGYA 2JZ8A 1XAOA 1NLTA 3C6EC 3AGXA 3L9ZA 4L3KA 2JVMA 3LZ8A 3NY0A 1EARA 3AGZA 3TJ8A 1GMVA 1GMWD 2QLDA 2ODXA 2JRRA 3TJ9A 3C5XC 3LA0A 3TJAA 1GMWA 1GMUA 2B26A
chains in the Genus database with same CATH topology
4J80A 1C3GA 1EB0A 3I38A 3NXZA 2Q2GA 3AGYA 1XAOA 1NLTA 3AGXA 3L9ZA 4L3KA 3LZ8A 3NY0A 1EARA 3AGZA 3TJ8A 1GMVA 1GMWD 2QLDA 3TJ9A 3LA0A 3TJAA 1GMWA 1GMUA 2B26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J80 A;  1C3G A;  1EB0 A;  3I38 A;  3NXZ A;  2Q2G A;  3AGY A;  1XAO A;  1NLT A;  3AGX A;  3L9Z A;  4L3K A;  3LZ8 A;  3NY0 A;  1EAR A;  3AGZ A;  3TJ8 A;  1GMV A;  1GMW D;  2QLD A;  3TJ9 A;  3LA0 A;  3TJA A;  1GMW A;  1GMU A;  2B26 A; 
#chains in the Genus database with same CATH topology
 4J80 A;  3AKO B;  1C3G A;  1EB0 A;  3I38 A;  3NXZ A;  2Q2G A;  3AGY A;  2JZ8 A;  1XAO A;  1NLT A;  3C6E C;  3AGX A;  3L9Z A;  4L3K A;  2JVM A;  3LZ8 A;  3NY0 A;  1EAR A;  3AGZ A;  3TJ8 A;  1GMV A;  1GMW D;  2QLD A;  2ODX A;  2JRR A;  3TJ9 A;  3C5X C;  3LA0 A;  3TJA A;  1GMW A;  1GMU A;  2B26 A; 
#chains in the Genus database with same CATH homology
 4J80 A;  1C3G A;  1EB0 A;  3I38 A;  3NXZ A;  2Q2G A;  3AGY A;  1XAO A;  1NLT A;  3AGX A;  3L9Z A;  4L3K A;  3LZ8 A;  3NY0 A;  1EAR A;  3AGZ A;  3TJ8 A;  1GMV A;  1GMW D;  2QLD A;  3TJ9 A;  3LA0 A;  3TJA A;  1GMW A;  1GMU A;  2B26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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