2QLDA

Human hsp40 hdj1
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
174
structure length
171
Chain Sequence
PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords DnaJ homolog subfamily B member 1
publication title The crystal structure of the putative peptide-binding fragment from the human Hsp40 protein Hdj1.
pubmed doi rcsb
source organism Homo sapiens
total genus 29
structure length 171
sequence length 174
ec nomenclature
pdb deposition date 2007-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2qldA01
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2qldA02
3AGYA 4L3KA 1EB0A 2Q2GA 3TJ8A 3TJAA 3AGZA 1NLTA 1EARA 3LZ8A 1GMVA 1GMWA 1GMUA 3I38A 4J80A 3L9ZA 3NXZA 3TJ9A 1GMWD 3NY0A 1C3GA 2B26A 3LA0A 2QLDA 1XAOA 3AGXA
chains in the Genus database with same CATH superfamily
3AGYA 4L3KA 1EB0A 2Q2GA 3TJ8A 3TJAA 3AGZA 1NLTA 1EARA 3C6EC 2JRRA 3LZ8A 1GMVA 2JVMA 1GMWA 1GMUA 2ODXA 3I38A 4J80A 3L9ZA 3NXZA 3TJ9A 1GMWD 3NY0A 1C3GA 2B26A 2JZ8A 3AKOB 3LA0A 2QLDA 3C5XC 1XAOA 3AGXA
chains in the Genus database with same CATH topology
3AGYA 4L3KA 1EB0A 2Q2GA 3TJ8A 3TJAA 3AGZA 1NLTA 1EARA 3LZ8A 1GMVA 1GMWA 1GMUA 3I38A 4J80A 3L9ZA 3NXZA 3TJ9A 1GMWD 3NY0A 1C3GA 2B26A 3LA0A 2QLDA 1XAOA 3AGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AGY A;  4L3K A;  1EB0 A;  2Q2G A;  3TJ8 A;  3TJA A;  3AGZ A;  1NLT A;  1EAR A;  3LZ8 A;  1GMV A;  1GMW A;  1GMU A;  3I38 A;  4J80 A;  3L9Z A;  3NXZ A;  3TJ9 A;  1GMW D;  3NY0 A;  1C3G A;  2B26 A;  3LA0 A;  2QLD A;  1XAO A;  3AGX A; 
#chains in the Genus database with same CATH topology
 3AGY A;  4L3K A;  1EB0 A;  2Q2G A;  3TJ8 A;  3TJA A;  3AGZ A;  1NLT A;  1EAR A;  3C6E C;  2JRR A;  3LZ8 A;  1GMV A;  2JVM A;  1GMW A;  1GMU A;  2ODX A;  3I38 A;  4J80 A;  3L9Z A;  3NXZ A;  3TJ9 A;  1GMW D;  3NY0 A;  1C3G A;  2B26 A;  2JZ8 A;  3AKO B;  3LA0 A;  2QLD A;  3C5X C;  1XAO A;  3AGX A; 
#chains in the Genus database with same CATH homology
 3AGY A;  4L3K A;  1EB0 A;  2Q2G A;  3TJ8 A;  3TJA A;  3AGZ A;  1NLT A;  1EAR A;  3LZ8 A;  1GMV A;  1GMW A;  1GMU A;  3I38 A;  4J80 A;  3L9Z A;  3NXZ A;  3TJ9 A;  1GMW D;  3NY0 A;  1C3G A;  2B26 A;  3LA0 A;  2QLD A;  1XAO A;  3AGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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