The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
26
|
sequence length |
104
|
structure length |
104
|
Chain Sequence |
MTGQELRQLLLDKWGYSYDVQFRRTQGKIFLQVMWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDLGERASEWIILE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Alr2454 protein
|
| publication title |
Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267.
pubmed doi rcsb |
| source organism |
Nostoc sp.
|
| total genus |
26
|
| structure length |
104
|
| sequence length |
104
|
| ec nomenclature | |
| pdb deposition date | 2011-09-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11267 | DUF3067 | Domain of unknown function (DUF3067) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT family, subunit A |
#chains in the Genus database with same CATH superfamily 2LJW A; #chains in the Genus database with same CATH topology 1KPF A; 2Q4H A; 1XML A; 1FHI A; 3ANO A; 1FIT A; 3N1T A; 3RHN A; 4NDF A; 1Z84 A; 4I5W A; 1L9V A; 2FHI A; 3I4S A; 3LB5 A; 4EGU A; 1KPA A; 2R7J A; 6RHN A; 1KPE A; 4ZKL A; 4EQH A; 3O1X A; 4I5T A; 3L7X A; 4FIT A; 3SZQ A; 1RZY A; 5IPB A; 3O0M A; 1HXP A; 4RHN A; 5ED3 A; 1Y23 A; 5EMT A; 3KSV A; 3OXK A; 4NK0 A; 2FIT A; 3TW2 A; 4NJZ A; 3OMF A; 1ST4 A; 2OIK A; 3QGZ A; 4EQG A; 3BL7 A; 4XBA A; 3N1S A; 3FIT A; 4NJX A; 4EQE A; 4QEB A; 5FIT A; 5RHN A; 3IMI A; 5ED6 A; 4YKL B; 1KPB A; 2H39 A; 2R7P A; 3SPL A; 1HXQ A; 5BV3 A; 1GUP A; 3SPD A; 2GU0 A; 4I5V A; 5CS2 A; 3R6F A; 4NJY A; 2EO4 A; 1GUQ A; 2R7C A; 4INI A; 3SP4 A; 2LJW A; 1EMS A; 6FIT A; 4QDV A; 3P0T A; 4ZGL A; 4QDE A; 1KPC A; 1VLR A; 2R8F A; 3OHE A; 3BL9 A; 5IPD A; 4INC A; 1ZWJ A; 4NDH A; 3O1Z A; 5IPE A; 3I24 A; 3NRD A; 5I2E A; 4G0A A; 3OJ7 A; 1AV5 A; 5I2F A; 2POF A; 3BLA A; 5IPC A; 5IN3 A; 4ZKV A; 3WO5 A; 2Q4L A; 4NDG A; 1ST0 A; 1XMM A; 3O1C A; 4G0J A; 4NDI A; #chains in the Genus database with same CATH homology 2LJW A; 4I5W A; 4I5V A; 4I5T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
