2WBWA

Ad37 fibre head in complex with car d1 and sialic acid
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
182
structure length
182
Chain Sequence
RTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords FIBER PROTEIN
publication title The Cell Adhesion Molecule "Car" and Sialic Acid on Human Erythrocytes Influence Adenovirus in Vivo Biodistribution.
pubmed doi rcsb
source organism Human adenovirus 37
total genus 40
structure length 182
sequence length 182
ec nomenclature
pdb deposition date 2009-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 2wbwA00
1H7ZA 4LIYA 2WBVA 4WYJA 4K6VA 2W9LC 2WBWA 3CNCA 1UXBA 1QIUA 1UXAA 2J2JA 2BZUA 2WGUA 4XQBA 1NOBA 2WGTA 1P6AA 2WSTA 3QNDA 1QHVA 4ATZA 2J1KC 4K6WA 2O39A 4ZDGA 1P69A 3F0YA 4K6UA 4XQAA 4K6TA 3BQ4A 3N0IA 2J12A 3EXVA 3L89A 1KNBA 2BZVA 1KACA 3EXWA 3L88A 3O8EA 4XL8A 1UXEA 2QLKA
chains in the Genus database with same CATH superfamily
1H7ZA 4LIYA 2WBVA 4WYJA 4K6VA 2W9LC 4GU4A 2WBWA 3CNCA 2VRSA 1UXBA 2BT8A 1QIUA 1UXAA 2BZUA 2J2JA 2WGUA 4XQBA 2VTWA 3ZPEA 4D62A 1NOBA 2WGTA 1P6AA 2WSTA 3QNDA 1QHVA 2BSFA 4ATZA 2JJLA 2J1KC 4K6WA 2O39A 4ZDGA 1P69A 3F0YA 4K6UA 4XQAA 4K6TA 3BQ4A 3EOYA 2BT7A 2J12A 2IUMA 3EXVA 3N0IA 3L89A 4XC5A 1KNBA 4ODBA 2BZVA 1KACA 3EXWA 4CW8A 5MHSA 3L88A 3O8EA 4GU3A 2OJ5A 4XL8A 4D63A 2OJ6A 2IUNA 3ZPFA 1UXEA 3S6XA 1KKEA 2QLKA
chains in the Genus database with same CATH topology
1H7ZA 4LIYA 2WBVA 4WYJA 4K6VA 2W9LC 2WBWA 3CNCA 1UXBA 1QIUA 1UXAA 2J2JA 2BZUA 2WGUA 4XQBA 1NOBA 2WGTA 1P6AA 2WSTA 3QNDA 1QHVA 4ATZA 2J1KC 4K6WA 2O39A 4ZDGA 1P69A 3F0YA 4K6UA 4XQAA 4K6TA 3BQ4A 3N0IA 2J12A 3EXVA 3L89A 1KNBA 2BZVA 1KACA 3EXWA 3L88A 3O8EA 4XL8A 1UXEA 2QLKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H7Z A;  4LIY A;  2WBV A;  4WYJ A;  4K6V A;  2W9L C;  2WBW A;  3CNC A;  1UXB A;  1QIU A;  1UXA A;  2J2J A;  2BZU A;  2WGU A;  4XQB A;  1NOB A;  2WGT A;  1P6A A;  2WST A;  3QND A;  1QHV A;  4ATZ A;  2J1K C;  4K6W A;  2O39 A;  4ZDG A;  1P69 A;  3F0Y A;  4K6U A;  4XQA A;  4K6T A;  3BQ4 A;  3N0I A;  2J12 A;  3EXV A;  3L89 A;  1KNB A;  2BZV A;  1KAC A;  3EXW A;  3L88 A;  3O8E A;  4XL8 A;  1UXE A;  2QLK A; 
#chains in the Genus database with same CATH topology
 1H7Z A;  4LIY A;  2WBV A;  4WYJ A;  4K6V A;  2W9L C;  4GU4 A;  2WBW A;  3CNC A;  2VRS A;  1UXB A;  2BT8 A;  1QIU A;  1UXA A;  2BZU A;  2J2J A;  2WGU A;  4XQB A;  2VTW A;  3ZPE A;  4D62 A;  1NOB A;  2WGT A;  1P6A A;  2WST A;  3QND A;  1QHV A;  2BSF A;  4ATZ A;  2JJL A;  2J1K C;  4K6W A;  2O39 A;  4ZDG A;  1P69 A;  3F0Y A;  4K6U A;  4XQA A;  4K6T A;  3BQ4 A;  3EOY A;  2BT7 A;  2J12 A;  2IUM A;  3EXV A;  3N0I A;  3L89 A;  4XC5 A;  1KNB A;  4ODB A;  2BZV A;  1KAC A;  3EXW A;  4CW8 A;  5MHS A;  3L88 A;  3O8E A;  4GU3 A;  2OJ5 A;  4XL8 A;  4D63 A;  2OJ6 A;  2IUN A;  3ZPF A;  1UXE A;  3S6X A;  1KKE A;  2QLK A; 
#chains in the Genus database with same CATH homology
 1H7Z A;  4LIY A;  2WBV A;  4WYJ A;  4K6V A;  2W9L C;  2WBW A;  3CNC A;  1UXB A;  1QIU A;  1UXA A;  2J2J A;  2BZU A;  2WGU A;  4XQB A;  1NOB A;  2WGT A;  1P6A A;  2WST A;  3QND A;  1QHV A;  4ATZ A;  2J1K C;  4K6W A;  2O39 A;  4ZDG A;  1P69 A;  3F0Y A;  4K6U A;  4XQA A;  4K6T A;  3BQ4 A;  3N0I A;  2J12 A;  3EXV A;  3L89 A;  1KNB A;  2BZV A;  1KAC A;  3EXW A;  3L88 A;  3O8E A;  4XL8 A;  1UXE A;  2QLK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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