The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
161
|
structure length |
161
|
Chain Sequence |
PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein/cell adhesion
|
| molecule keywords |
Outer capsid protein sigma-1
|
| publication title |
Structure of reovirus sigma1 in complex with its receptor junctional adhesion molecule-A
pubmed doi rcsb |
| source organism |
Reovirus
|
| total genus |
32
|
| structure length |
161
|
| sequence length |
161
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2008-09-29 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain |
#chains in the Genus database with same CATH superfamily 4ODB A; 1KKE A; 3S6X A; 2OJ6 A; 4GU4 A; 5MHS A; 4XC5 A; 4GU3 A; 2OJ5 A; 3EOY A; #chains in the Genus database with same CATH topology 2J12 A; 3EXW A; 1KAC A; 3QND A; 2J1K C; 3BQ4 A; 4XL8 A; 4K6U A; 4GU4 A; 1KNB A; 2BT7 A; 3EXV A; 3N0I A; 4XC5 A; 5MHS A; 4WYJ A; 2OJ5 A; 1NOB A; 3S6X A; 4LIY A; 3ZPF A; 3L89 A; 2WGU A; 1UXB A; 4XQB A; 2WST A; 2BZV A; 2BSF A; 1P69 A; 2IUM A; 2O39 A; 2BT8 A; 4GU3 A; 2VRS A; 4XQA A; 1UXE A; 1UXA A; 1KKE A; 1H7Z A; 1P6A A; 2IUN A; 2VTW A; 4K6W A; 4D63 A; 4D62 A; 2BZU A; 1QIU A; 4ATZ A; 3L88 A; 2WBW A; 4K6V A; 3EOY A; 3CNC A; 3O8E A; 4ODB A; 4CW8 A; 3F0Y A; 2OJ6 A; 2J2J A; 2JJL A; 1QHV A; 4K6T A; 2W9L C; 3ZPE A; 4ZDG A; 2QLK A; 2WBV A; 2WGT A; #chains in the Genus database with same CATH homology 4ODB A; 1KKE A; 3S6X A; 2OJ6 A; 4GU4 A; 5MHS A; 4XC5 A; 4GU3 A; 2OJ5 A; 3EOY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
