2NTIA

Crystal structure of pcna123 heterotrimer.
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
248
structure length
248
Chain Sequence
MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA polymerase sliding clamp B
publication title Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 64
structure length 248
sequence length 248
chains with identical sequence D, G
ec nomenclature
pdb deposition date 2006-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2ntiA01
1UL1A 4L6PA 5E0UA 1SXJF 3U60F 3WGWA 1PLRA 2IO4A 3V61B 3AIZC 1VYJA 2IZOB 1ISQA 4L60A 1UD9A 2ZVMA 3GGRB 2NTIC 1RWZA 3AIXA 2HIKB 2OD8A 5IXAA 3G65C 4TR6A 3U5ZF 4HK1A 2IX2B 5H0TA 5E0TA 3A1JB 5AUJA 5DA7A 2HIIA 3A2FB 3TBLA 3FDSD 1U7BA 1RXZA 3U61F 3P87A 3V60B 3HI8A 1PLQA 3IFVA 3FDSC 4ZTDA 3GGRA 2NTIB 2AVTA 1GE8A 1T6LA 3G65B 3LX1A 3P91A 2IX2A 3A1JA 1RXMA 5IWDA 5HACA 5CFKA 3I2MX 2HIIC 2ZVWA 4CS5A 1CZDA 3P83A 3K4XA 2ZVVA 1IZ4A 1U76A 4YHRA 5B7OA 2ZVKA 1DMLA 3GGRC 3AIXB 1YYPA 2HIKA 2ZVLA 1VYMA 2AWAA 2IX2C 3A1JC 2HIIB 5A6DA 2IJXA 3F1WA 3GPMA 5E0VA 3AIZA 2IO4B 4RJFA 3LX2A 5DAIA 3HSLX 1AXCA 5IY4A 4D2GA 2IZOC 5JNED 1IZ5A 2Z0LA 3GPNA 3V62B 3VKXA 2NTIA 1B77A 1W60A 3G65A 2HIKC 1B8HA
chains in the Genus database with same CATH superfamily
1UL1A 4L6PA 5E0UA 1SXJF 3U60F 3WGWA 1PLRA 2IO4A 3V61B 3AIZC 1VYJA 2IZOB 1ISQA 4L60A 1UD9A 2ZVMA 3GGRB 2NTIC 1RWZA 3AIXA 2HIKB 2OD8A 5IXAA 3G65C 4TR6A 3U5ZF 4HK1A 2IX2B 5H0TA 5E0TA 3A1JB 5AUJA 5DA7A 2HIIA 3A2FB 3TBLA 3FDSD 1U7BA 1RXZA 3U61F 3P87A 3V60B 3HI8A 1PLQA 3IFVA 3FDSC 4ZTDA 3GGRA 2NTIB 2AVTA 1GE8A 1T6LA 3G65B 3LX1A 3P91A 2IX2A 3A1JA 1RXMA 5IWDA 5HACA 5CFKA 3I2MX 2HIIC 2ZVWA 4CS5A 1CZDA 3P83A 3K4XA 2ZVVA 1IZ4A 1U76A 4YHRA 5B7OA 2ZVKA 1DMLA 3GGRC 3AIXB 1YYPA 2HIKA 2ZVLA 1VYMA 2AWAA 2IX2C 3A1JC 2HIIB 5A6DA 2IJXA 3F1WA 3GPMA 5E0VA 3AIZA 2IO4B 4RJFA 3LX2A 5DAIA 3HSLX 1AXCA 5IY4A 4D2GA 2IZOC 5JNED 1IZ5A 2Z0LA 3GPNA 3V62B 3VKXA 2NTIA 1B77A 1W60A 3G65A 2HIKC 1B8HA
chains in the Genus database with same CATH topology
1UL1A 4L6PA 5E0UA 1SXJF 3U60F 3WGWA 1PLRA 2IO4A 3V61B 3AIZC 1VYJA 2IZOB 1ISQA 4L60A 1UD9A 2ZVMA 3GGRB 2NTIC 1RWZA 3AIXA 2HIKB 2OD8A 5IXAA 3G65C 4TR6A 3U5ZF 4HK1A 2IX2B 5H0TA 5E0TA 3A1JB 5AUJA 5DA7A 2HIIA 3A2FB 3TBLA 3FDSD 1U7BA 1RXZA 3U61F 3P87A 3V60B 3HI8A 1PLQA 3IFVA 3FDSC 4ZTDA 3GGRA 2NTIB 2AVTA 1GE8A 1T6LA 3G65B 3LX1A 3P91A 2IX2A 3A1JA 1RXMA 5IWDA 5HACA 5CFKA 3I2MX 2HIIC 2ZVWA 4CS5A 1CZDA 3P83A 3K4XA 2ZVVA 1IZ4A 1U76A 4YHRA 5B7OA 2ZVKA 1DMLA 3GGRC 3AIXB 1YYPA 2HIKA 2ZVLA 1VYMA 2AWAA 2IX2C 3A1JC 2HIIB 5A6DA 2IJXA 3F1WA 3GPMA 5E0VA 3AIZA 2IO4B 4RJFA 3LX2A 5DAIA 3HSLX 1AXCA 5IY4A 4D2GA 2IZOC 5JNED 1IZ5A 2Z0LA 3GPNA 3V62B 3VKXA 2NTIA 1B77A 1W60A 3G65A 2HIKC 1B8HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UL1 A;  4L6P A;  5E0U A;  1SXJ F;  3U60 F;  3WGW A;  1PLR A;  2IO4 A;  3V61 B;  3AIZ C;  1VYJ A;  2IZO B;  1ISQ A;  4L60 A;  1UD9 A;  2ZVM A;  3GGR B;  2NTI C;  1RWZ A;  3AIX A;  2HIK B;  2OD8 A;  5IXA A;  3G65 C;  4TR6 A;  3U5Z F;  4HK1 A;  2IX2 B;  5H0T A;  5E0T A;  3A1J B;  5AUJ A;  5DA7 A;  2HII A;  3A2F B;  3TBL A;  3FDS D;  1U7B A;  1RXZ A;  3U61 F;  3P87 A;  3V60 B;  3HI8 A;  1PLQ A;  3IFV A;  3FDS C;  4ZTD A;  3GGR A;  2NTI B;  2AVT A;  1GE8 A;  1T6L A;  3G65 B;  3LX1 A;  3P91 A;  2IX2 A;  3A1J A;  1RXM A;  5IWD A;  5HAC A;  5CFK A;  3I2M X;  2HII C;  2ZVW A;  4CS5 A;  1CZD A;  3P83 A;  3K4X A;  2ZVV A;  1IZ4 A;  1U76 A;  4YHR A;  5B7O A;  2ZVK A;  1DML A;  3GGR C;  3AIX B;  1YYP A;  2HIK A;  2ZVL A;  1VYM A;  2AWA A;  2IX2 C;  3A1J C;  2HII B;  5A6D A;  2IJX A;  3F1W A;  3GPM A;  5E0V A;  3AIZ A;  2IO4 B;  4RJF A;  3LX2 A;  5DAI A;  3HSL X;  1AXC A;  5IY4 A;  4D2G A;  2IZO C;  5JNE D;  1IZ5 A;  2Z0L A;  3GPN A;  3V62 B;  3VKX A;  2NTI A;  1B77 A;  1W60 A;  3G65 A;  2HIK C;  1B8H A; 
#chains in the Genus database with same CATH topology
 1UL1 A;  4L6P A;  5E0U A;  1SXJ F;  3U60 F;  3WGW A;  1PLR A;  2IO4 A;  3V61 B;  3AIZ C;  1VYJ A;  2IZO B;  1ISQ A;  4L60 A;  1UD9 A;  2ZVM A;  3GGR B;  2NTI C;  1RWZ A;  3AIX A;  2HIK B;  2OD8 A;  5IXA A;  3G65 C;  4TR6 A;  3U5Z F;  4HK1 A;  2IX2 B;  5H0T A;  5E0T A;  3A1J B;  5AUJ A;  5DA7 A;  2HII A;  3A2F B;  3TBL A;  3FDS D;  1U7B A;  1RXZ A;  3U61 F;  3P87 A;  3V60 B;  3HI8 A;  1PLQ A;  3IFV A;  3FDS C;  4ZTD A;  3GGR A;  2NTI B;  2AVT A;  1GE8 A;  1T6L A;  3G65 B;  3LX1 A;  3P91 A;  2IX2 A;  3A1J A;  1RXM A;  5IWD A;  5HAC A;  5CFK A;  3I2M X;  2HII C;  2ZVW A;  4CS5 A;  1CZD A;  3P83 A;  3K4X A;  2ZVV A;  1IZ4 A;  1U76 A;  4YHR A;  5B7O A;  2ZVK A;  1DML A;  3GGR C;  3AIX B;  1YYP A;  2HIK A;  2ZVL A;  1VYM A;  2AWA A;  2IX2 C;  3A1J C;  2HII B;  5A6D A;  2IJX A;  3F1W A;  3GPM A;  5E0V A;  3AIZ A;  2IO4 B;  4RJF A;  3LX2 A;  5DAI A;  3HSL X;  1AXC A;  5IY4 A;  4D2G A;  2IZO C;  5JNE D;  1IZ5 A;  2Z0L A;  3GPN A;  3V62 B;  3VKX A;  2NTI A;  1B77 A;  1W60 A;  3G65 A;  2HIK C;  1B8H A; 
#chains in the Genus database with same CATH homology
 1UL1 A;  4L6P A;  5E0U A;  1SXJ F;  3U60 F;  3WGW A;  1PLR A;  2IO4 A;  3V61 B;  3AIZ C;  1VYJ A;  2IZO B;  1ISQ A;  4L60 A;  1UD9 A;  2ZVM A;  3GGR B;  2NTI C;  1RWZ A;  3AIX A;  2HIK B;  2OD8 A;  5IXA A;  3G65 C;  4TR6 A;  3U5Z F;  4HK1 A;  2IX2 B;  5H0T A;  5E0T A;  3A1J B;  5AUJ A;  5DA7 A;  2HII A;  3A2F B;  3TBL A;  3FDS D;  1U7B A;  1RXZ A;  3U61 F;  3P87 A;  3V60 B;  3HI8 A;  1PLQ A;  3IFV A;  3FDS C;  4ZTD A;  3GGR A;  2NTI B;  2AVT A;  1GE8 A;  1T6L A;  3G65 B;  3LX1 A;  3P91 A;  2IX2 A;  3A1J A;  1RXM A;  5IWD A;  5HAC A;  5CFK A;  3I2M X;  2HII C;  2ZVW A;  4CS5 A;  1CZD A;  3P83 A;  3K4X A;  2ZVV A;  1IZ4 A;  1U76 A;  4YHR A;  5B7O A;  2ZVK A;  1DML A;  3GGR C;  3AIX B;  1YYP A;  2HIK A;  2ZVL A;  1VYM A;  2AWA A;  2IX2 C;  3A1J C;  2HII B;  5A6D A;  2IJX A;  3F1W A;  3GPM A;  5E0V A;  3AIZ A;  2IO4 B;  4RJF A;  3LX2 A;  5DAI A;  3HSL X;  1AXC A;  5IY4 A;  4D2G A;  2IZO C;  5JNE D;  1IZ5 A;  2Z0L A;  3GPN A;  3V62 B;  3VKX A;  2NTI A;  1B77 A;  1W60 A;  3G65 A;  2HIK C;  1B8H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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