The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
65
|
Knots found |
|
sequence length |
236
|
structure length |
236
|
Chain Sequence |
DSIDDKKWSKLFPRIVSDPDRSSNFMTRAIYVAFSAVLRNRNILGQEYFTKNYITEKLKCMTLCFRNLRSNQIAQLLRNAGDATKDGFLKEVSLVITNNEGDLEAIEVFSMKFIYFENGGVVARLSTDKNGQEDPHFAKLAQLVYEGGDSVRDQMVTIVRSVQFLCTKVLEPLPEEFTANFRLEYTNDAPSNFRIDGFEDSSTFYTLPDDIQSATIGHLRPGCHAANMECWSMLMS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Peptide binding protein
|
| molecule keywords |
Protein HTP-1
|
| publication title |
The Chromosome Axis Controls Meiotic Events through a Hierarchical Assembly of HORMA Domain Proteins.
pubmed doi rcsb |
| source organism |
Caenorhabditis elegans
|
| total genus |
65
|
| structure length |
236
|
| sequence length |
236
|
| chains with identical sequence |
C, E, G
|
| other databases |
 KnotProt 2.0: S +31
|
| ec nomenclature | |
| pdb deposition date | 2014-07-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02301 | HORMA | HORMA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A | HORMA domain |
#chains in the Genus database with same CATH superfamily 1GO4 A; 2V64 A; 2QYF A; 4TZS A; 4EXT C; 4GK5 A; 1DUJ A; 3VU7 C; 4GK0 A; 4TRK A; 4TZN A; 4J2G A; 5LCW Z; 1KLQ A; 2VFX A; 4FJO C; 4TZL A; 2V64 D; 5C50 B; 3ABD A; 1S2H A; 4YK8 B; 4TZM A; 4TZQ A; 3ABE C; 4TZO A; 4AEZ B; 4TZJ A; 3GMH A; #chains in the Genus database with same CATH topology 1GO4 A; 2V64 A; 2QYF A; 4TZS A; 4EXT C; 4GK5 A; 1DUJ A; 3VU7 C; 4GK0 A; 4TRK A; 4TZN A; 4J2G A; 5LCW Z; 1KLQ A; 2VFX A; 4FJO C; 4TZL A; 2V64 D; 5C50 B; 3ABD A; 2QYF B; 1S2H A; 4YK8 B; 4TZM A; 4TZQ A; 3ABE C; 4TZO A; 4AEZ B; 4TZJ A; 3GMH A; #chains in the Genus database with same CATH homology 1GO4 A; 2V64 A; 2QYF A; 4TZS A; 4EXT C; 4GK5 A; 1DUJ A; 3VU7 C; 4GK0 A; 4TRK A; 4TZN A; 4J2G A; 5LCW Z; 1KLQ A; 2VFX A; 4FJO C; 4TZL A; 2V64 D; 5C50 B; 3ABD A; 1S2H A; 4YK8 B; 4TZM A; 4TZQ A; 3ABE C; 4TZO A; 4AEZ B; 4TZJ A; 3GMH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
