1A6YA

Reverba orphan nuclear receptor/dna complex
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
78
structure length
78
Chain Sequence
LLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription/dna
source organism Homo sapiens
publication title Structural elements of an orphan nuclear receptor-DNA complex.
pubmed doi rcsb
molecule keywords DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*
total genus 16
structure length 78
sequence length 78
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 1a6yA00
3G6PA 1GAUA 5CBXA 4HN6A 3DZYD 5KRBB 1R0NA 1BY4A 1CITA 5CBYA 1A6YA 4TMAI 4CN2C 1YNWA 3DZUA 5CC1A 1R4OA 1R0OA 1HCQA 4CN5A 1KB6A 5EMQA 2NLLB 2VUUI 6GATA 2VUTI 1RGDA 2KAEA 4GATA 1R4IA 5L0MA 4HC9A 3DFVC 1KB4A 4OV7A 3G6RA 3VD6C 3G6QA 4NQAB 4OLNA 5EMPA 5E6AA 4TNTA 2VUSI 3G9MA 1HCPA 1GA5A 4CN3A 1LV3A 3G8XA 4CN3D 1GATA 1GNFA 5E6BA 2GATA 3G9IA 5GATA 2HANB 4HC7A 4OORA 1KB2A 1DSZB 3FYLA 3VEKC 4CN7A 1LATA 3G8UA 1R4RA 5CC0A 2GDAA 2NLLA 4AA6A 3G6TA 3CBBA 3GATA 2HANA 5E69A 3G99A 3G9JA 2C7AA 2FF0A 3E00A 5CBZA 3E00D 1LO1A 5EMCA 1GLUA 7GATA 4IQRA 2M9WA 1RXRA 2ENVA 3DZUD 5E6DA 1R0NB 3M9EA 2EBLA 1YNWB 3G6UA 3G97A 4HN5A 4HCAA 5E6CA 1R0OB 3DFXA 1DSZA 3G9PA 2A66A 1GDCA 4ONDA 1HRAA 3DZYA 1HLZA 3G9OA
chains in the Genus database with same CATH superfamily
3G6PA 1GAUA 5CBXA 4HN6A 3DZYD 5KRBB 1R0NA 1BY4A 1CITA 5CBYA 1A6YA 4TMAI 4CN2C 1YNWA 3DZUA 5CC1A 1R4OA 1R0OA 1HCQA 4CN5A 1KB6A 5EMQA 2NLLB 2VUUI 6GATA 2VUTI 1RGDA 2KAEA 4GATA 1R4IA 5L0MA 4HC9A 3DFVC 1KB4A 4OV7A 3G6RA 3VD6C 3G6QA 4NQAB 4OLNA 5EMPA 5E6AA 4TNTA 2VUSI 3G9MA 1HCPA 1GA5A 4CN3A 1LV3A 3G8XA 2DS6A 4CN3D 1GATA 1GNFA 5E6BA 2GATA 3G9IA 5GATA 2HANB 4HC7A 2DS8A 4OORA 1KB2A 1DSZB 3G27A 3FYLA 3VEKC 4CN7A 1LATA 3G8UA 1R4RA 5CC0A 2GDAA 2DS5A 2NLLA 4AA6A 3G6TA 3CBBA 3GATA 2HANA 5E69A 3G99A 3G9JA 2C7AA 2FF0A 3E00A 5CBZA 3E00D 1LO1A 5EMCA 1GLUA 7GATA 4IQRA 2M9WA 1RXRA 2ENVA 3DZUD 5E6DA 1R0NB 3M9EA 2EBLA 1YNWB 3G6UA 3G97A 4HN5A 4HCAA 5E6CA 1R0OB 3DFXA 1DSZA 3G9PA 2A66A 1GDCA 4ONDA 1HRAA 3DZYA 1HLZA 3G9OA
chains in the Genus database with same CATH topology
3G6PA 1GAUA 5CBXA 4HN6A 3DZYD 5KRBB 1R0NA 1BY4A 1CITA 5CBYA 1A6YA 4TMAI 4CN2C 1YNWA 3DZUA 5CC1A 1R4OA 1R0OA 1HCQA 4CN5A 1KB6A 5EMQA 2NLLB 2VUUI 6GATA 2VUTI 1RGDA 2KAEA 4GATA 1R4IA 5L0MA 4HC9A 3DFVC 1KB4A 4OV7A 3G6RA 3VD6C 3G6QA 4NQAB 4OLNA 5EMPA 5E6AA 4TNTA 2VUSI 3G9MA 1HCPA 1GA5A 4CN3A 1LV3A 3G8XA 4CN3D 1GATA 1GNFA 5E6BA 2GATA 3G9IA 5GATA 2HANB 4HC7A 4OORA 1KB2A 1DSZB 3FYLA 3VEKC 4CN7A 1LATA 3G8UA 1R4RA 5CC0A 2GDAA 2NLLA 4AA6A 3G6TA 3CBBA 3GATA 2HANA 5E69A 3G99A 3G9JA 2C7AA 2FF0A 3E00A 5CBZA 3E00D 1LO1A 5EMCA 1GLUA 7GATA 4IQRA 2M9WA 1RXRA 2ENVA 3DZUD 5E6DA 1R0NB 3M9EA 2EBLA 1YNWB 3G6UA 3G97A 4HN5A 4HCAA 5E6CA 1R0OB 3DFXA 1DSZA 3G9PA 2A66A 1GDCA 4ONDA 1HRAA 3DZYA 1HLZA 3G9OA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3G6P A;  1GAU A;  5CBX A;  4HN6 A;  3DZY D;  5KRB B;  1R0N A;  1BY4 A;  1CIT A;  5CBY A;  1A6Y A;  4TMA I;  4CN2 C;  1YNW A;  3DZU A;  5CC1 A;  1R4O A;  1R0O A;  1HCQ A;  4CN5 A;  1KB6 A;  5EMQ A;  2NLL B;  2VUU I;  6GAT A;  2VUT I;  1RGD A;  2KAE A;  4GAT A;  1R4I A;  5L0M A;  4HC9 A;  3DFV C;  1KB4 A;  4OV7 A;  3G6R A;  3VD6 C;  3G6Q A;  4NQA B;  4OLN A;  5EMP A;  5E6A A;  4TNT A;  2VUS I;  3G9M A;  1HCP A;  1GA5 A;  4CN3 A;  1LV3 A;  3G8X A;  4CN3 D;  1GAT A;  1GNF A;  5E6B A;  2GAT A;  3G9I A;  5GAT A;  2HAN B;  4HC7 A;  4OOR A;  1KB2 A;  1DSZ B;  3FYL A;  3VEK C;  4CN7 A;  1LAT A;  3G8U A;  1R4R A;  5CC0 A;  2GDA A;  2NLL A;  4AA6 A;  3G6T A;  3CBB A;  3GAT A;  2HAN A;  5E69 A;  3G99 A;  3G9J A;  2C7A A;  2FF0 A;  3E00 A;  5CBZ A;  3E00 D;  1LO1 A;  5EMC A;  1GLU A;  7GAT A;  4IQR A;  2M9W A;  1RXR A;  2ENV A;  3DZU D;  5E6D A;  1R0N B;  3M9E A;  2EBL A;  1YNW B;  3G6U A;  3G97 A;  4HN5 A;  4HCA A;  5E6C A;  1R0O B;  3DFX A;  1DSZ A;  3G9P A;  2A66 A;  1GDC A;  4OND A;  1HRA A;  3DZY A;  1HLZ A;  3G9O A; 
#chains in the Genus database with same CATH topology
 3G6P A;  1GAU A;  5CBX A;  4HN6 A;  3DZY D;  5KRB B;  1R0N A;  1BY4 A;  1CIT A;  5CBY A;  1A6Y A;  4TMA I;  4CN2 C;  1YNW A;  3DZU A;  5CC1 A;  1R4O A;  1R0O A;  1HCQ A;  4CN5 A;  1KB6 A;  5EMQ A;  2NLL B;  2VUU I;  6GAT A;  2VUT I;  1RGD A;  2KAE A;  4GAT A;  1R4I A;  5L0M A;  4HC9 A;  3DFV C;  1KB4 A;  4OV7 A;  3G6R A;  3VD6 C;  3G6Q A;  4NQA B;  4OLN A;  5EMP A;  5E6A A;  4TNT A;  2VUS I;  3G9M A;  1HCP A;  1GA5 A;  4CN3 A;  1LV3 A;  3G8X A;  2DS6 A;  4CN3 D;  1GAT A;  1GNF A;  5E6B A;  2GAT A;  3G9I A;  5GAT A;  2HAN B;  4HC7 A;  2DS8 A;  4OOR A;  1KB2 A;  1DSZ B;  3G27 A;  3FYL A;  3VEK C;  4CN7 A;  1LAT A;  3G8U A;  1R4R A;  5CC0 A;  2GDA A;  2DS5 A;  2NLL A;  4AA6 A;  3G6T A;  3CBB A;  3GAT A;  2HAN A;  5E69 A;  3G99 A;  3G9J A;  2C7A A;  2FF0 A;  3E00 A;  5CBZ A;  3E00 D;  1LO1 A;  5EMC A;  1GLU A;  7GAT A;  4IQR A;  2M9W A;  1RXR A;  2ENV A;  3DZU D;  5E6D A;  1R0N B;  3M9E A;  2EBL A;  1YNW B;  3G6U A;  3G97 A;  4HN5 A;  4HCA A;  5E6C A;  1R0O B;  3DFX A;  1DSZ A;  3G9P A;  2A66 A;  1GDC A;  4OND A;  1HRA A;  3DZY A;  1HLZ A;  3G9O A; 
#chains in the Genus database with same CATH homology
 3G6P A;  1GAU A;  5CBX A;  4HN6 A;  3DZY D;  5KRB B;  1R0N A;  1BY4 A;  1CIT A;  5CBY A;  1A6Y A;  4TMA I;  4CN2 C;  1YNW A;  3DZU A;  5CC1 A;  1R4O A;  1R0O A;  1HCQ A;  4CN5 A;  1KB6 A;  5EMQ A;  2NLL B;  2VUU I;  6GAT A;  2VUT I;  1RGD A;  2KAE A;  4GAT A;  1R4I A;  5L0M A;  4HC9 A;  3DFV C;  1KB4 A;  4OV7 A;  3G6R A;  3VD6 C;  3G6Q A;  4NQA B;  4OLN A;  5EMP A;  5E6A A;  4TNT A;  2VUS I;  3G9M A;  1HCP A;  1GA5 A;  4CN3 A;  1LV3 A;  3G8X A;  4CN3 D;  1GAT A;  1GNF A;  5E6B A;  2GAT A;  3G9I A;  5GAT A;  2HAN B;  4HC7 A;  4OOR A;  1KB2 A;  1DSZ B;  3FYL A;  3VEK C;  4CN7 A;  1LAT A;  3G8U A;  1R4R A;  5CC0 A;  2GDA A;  2NLL A;  4AA6 A;  3G6T A;  3CBB A;  3GAT A;  2HAN A;  5E69 A;  3G99 A;  3G9J A;  2C7A A;  2FF0 A;  3E00 A;  5CBZ A;  3E00 D;  1LO1 A;  5EMC A;  1GLU A;  7GAT A;  4IQR A;  2M9W A;  1RXR A;  2ENV A;  3DZU D;  5E6D A;  1R0N B;  3M9E A;  2EBL A;  1YNW B;  3G6U A;  3G97 A;  4HN5 A;  4HCA A;  5E6C A;  1R0O B;  3DFX A;  1DSZ A;  3G9P A;  2A66 A;  1GDC A;  4OND A;  1HRA A;  3DZY A;  1HLZ A;  3G9O A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.