The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
56
|
structure length |
56
|
Chain Sequence |
SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Analysis of MED-1 Reveals Unexpected Diversity in the Mechanism of DNA Recognition by GATA-type Zinc Finger Domains.
pubmed doi rcsb |
| molecule tags |
Transcription/dna
|
| source organism |
Caenorhabditis elegans
|
| molecule keywords |
GATA-type transcription factor
|
| total genus |
5
|
| structure length |
56
|
| sequence length |
56
|
| ec nomenclature | |
| pdb deposition date | 2008-11-04 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1; Chain A | Erythroid Transcription Factor GATA-1, subunit A |
#chains in the Genus database with same CATH superfamily 3G6Q A; 1RGD A; 2C7A A; 1HCQ A; 1KB6 A; 4HC9 A; 3E00 D; 3G6U A; 1GNF A; 5EMC A; 5CBZ A; 4GAT A; 2VUT I; 2NLL B; 1R0O A; 1R0N A; 1HLZ A; 5E6A A; 4OLN A; 5L0M A; 3VEK C; 2M9W A; 1KB4 A; 1GAU A; 4CN3 D; 4TMA I; 2HAN B; 5KRB B; 2A66 A; 5CBY A; 1GLU A; 3DFV C; 5CC0 A; 1CIT A; 1DSZ A; 3GAT A; 1LAT A; 4CN5 A; 3M9E A; 1R0N B; 6GAT A; 2VUU I; 1LO1 A; 4OOR A; 4NQA B; 4HC7 A; 1GDC A; 3G6P A; 3DZU D; 1GA5 A; 3G8U A; 1YNW A; 3G97 A; 5E6B A; 7GAT A; 4CN7 A; 3G6T A; 4AA6 A; 1R4O A; 5E6D A; 1GAT A; 4CN3 A; 3G6R A; 2ENV A; 3DZY D; 4TNT A; 5CBX A; 1HRA A; 4HN5 A; 1R0O B; 5EMP A; 5E6C A; 3G9J A; 3G9M A; 2GAT A; 3VD6 C; 5E69 A; 4OND A; 1HCP A; 3E00 A; 3G9I A; 3G9P A; 3DZU A; 1DSZ B; 3G99 A; 1LV3 A; 3G9O A; 4OV7 A; 2VUS I; 1R4R A; 2HAN A; 2KAE A; 4IQR A; 3FYL A; 1A6Y A; 5GAT A; 3DZY A; 2GDA A; 1YNW B; 1R4I A; 1KB2 A; 4HCA A; 5CC1 A; 4HN6 A; 3G8X A; 5EMQ A; 4CN2 C; 2NLL A; 1RXR A; 3CBB A; 3DFX A; 1BY4 A; 2FF0 A; 2EBL A; #chains in the Genus database with same CATH topology 3G6Q A; 1RGD A; 2C7A A; 1HCQ A; 1KB6 A; 4HC9 A; 3E00 D; 3G6U A; 1GNF A; 5EMC A; 5CBZ A; 4GAT A; 2VUT I; 2NLL B; 1R0O A; 1R0N A; 1HLZ A; 5E6A A; 4OLN A; 5L0M A; 3VEK C; 2M9W A; 2DS8 A; 1KB4 A; 1GAU A; 4CN3 D; 4TMA I; 2HAN B; 5KRB B; 2A66 A; 5CBY A; 1GLU A; 3DFV C; 5CC0 A; 1CIT A; 1DSZ A; 3GAT A; 1LAT A; 4CN5 A; 3M9E A; 1R0N B; 6GAT A; 2VUU I; 1LO1 A; 4OOR A; 4NQA B; 4HC7 A; 1GDC A; 3G6P A; 2DS5 A; 3DZU D; 1GA5 A; 3G8U A; 1YNW A; 3G97 A; 5E6B A; 7GAT A; 4CN7 A; 3G6T A; 4AA6 A; 1R4O A; 5E6D A; 2DS6 A; 1GAT A; 4CN3 A; 3G6R A; 2ENV A; 3DZY D; 4TNT A; 5CBX A; 1HRA A; 4HN5 A; 1R0O B; 5EMP A; 5E6C A; 3G9J A; 3G9M A; 2GAT A; 3VD6 C; 5E69 A; 4OND A; 1HCP A; 3E00 A; 3G27 A; 3G9I A; 3G9P A; 3DZU A; 1DSZ B; 3G99 A; 1LV3 A; 3G9O A; 4OV7 A; 2VUS I; 1R4R A; 2HAN A; 2KAE A; 4IQR A; 3FYL A; 1A6Y A; 5GAT A; 3DZY A; 2GDA A; 1YNW B; 1R4I A; 1KB2 A; 4HCA A; 5CC1 A; 4HN6 A; 3G8X A; 5EMQ A; 4CN2 C; 2NLL A; 1RXR A; 3CBB A; 3DFX A; 1BY4 A; 2FF0 A; 2EBL A; #chains in the Genus database with same CATH homology 3G6Q A; 1RGD A; 2C7A A; 1HCQ A; 1KB6 A; 4HC9 A; 3E00 D; 3G6U A; 1GNF A; 5EMC A; 5CBZ A; 4GAT A; 2VUT I; 2NLL B; 1R0O A; 1R0N A; 1HLZ A; 5E6A A; 4OLN A; 5L0M A; 3VEK C; 2M9W A; 1KB4 A; 1GAU A; 4CN3 D; 4TMA I; 2HAN B; 5KRB B; 2A66 A; 5CBY A; 1GLU A; 3DFV C; 5CC0 A; 1CIT A; 1DSZ A; 3GAT A; 1LAT A; 4CN5 A; 3M9E A; 1R0N B; 6GAT A; 2VUU I; 1LO1 A; 4OOR A; 4NQA B; 4HC7 A; 1GDC A; 3G6P A; 3DZU D; 1GA5 A; 3G8U A; 1YNW A; 3G97 A; 5E6B A; 7GAT A; 4CN7 A; 3G6T A; 4AA6 A; 1R4O A; 5E6D A; 1GAT A; 4CN3 A; 3G6R A; 2ENV A; 3DZY D; 4TNT A; 5CBX A; 1HRA A; 4HN5 A; 1R0O B; 5EMP A; 5E6C A; 3G9J A; 3G9M A; 2GAT A; 3VD6 C; 5E69 A; 4OND A; 1HCP A; 3E00 A; 3G9I A; 3G9P A; 3DZU A; 1DSZ B; 3G99 A; 1LV3 A; 3G9O A; 4OV7 A; 2VUS I; 1R4R A; 2HAN A; 2KAE A; 4IQR A; 3FYL A; 1A6Y A; 5GAT A; 3DZY A; 2GDA A; 1YNW B; 1R4I A; 1KB2 A; 4HCA A; 5CC1 A; 4HN6 A; 3G8X A; 5EMQ A; 4CN2 C; 2NLL A; 1RXR A; 3CBB A; 3DFX A; 1BY4 A; 2FF0 A; 2EBL A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
