1B0KA

S642a:fluorocitrate complex of aconitase
Total Genus 285
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
285
sequence length
753
structure length
753
Chain Sequence
RAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The mechanism of aconitase: 1.8 A resolution crystal structure of the S642a:citrate complex.
pubmed rcsb
molecule tags Lyase
source organism Sus scrofa
molecule keywords PROTEIN (ACONITASE)
total genus 285
structure length 753
sequence length 753
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 1998-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00330 Aconitase Aconitase family (aconitate hydratase)
A PF00694 Aconitase_C Aconitase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.19.10 Alpha Beta Alpha-Beta Barrel Aconitase; domain 4 Aconitase, domain 4 1b0kA04
3.30.499.10 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase, domain 3 1b0kA01
3.30.499.10 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase, domain 3 1b0kA03
3.40.1060.10 Alpha Beta 3-Layer(aba) Sandwich Aconitase; Domain 2 Aconitase, Domain 2 1b0kA02
1AMIA 1C97A 3VBAA 3H5JA 1V7LA 1ACOA 3SN2A 3H5EA 2B3YA 1FGHA 1AMJA 1L5JA 5ACNA 6ACNA 2PKPA 4KP2A 1C96A 7ACNA 2B3XA 1B0KA 1B0JA 1NISA 2HCUA 3H5HA 4KP1A 1NITA 4NQYA 1B0MA 3Q3WA 8ACNA 3SNPA
chains in the Genus database with same CATH superfamily
1AMIA 1C97A 3VBAA 3H5JA 1V7LA 1ACOA 3SN2A 3H5EA 2B3YA 1FGHA 1AMJA 1L5JA 5ACNA 6ACNA 2PKPA 4KP2A 1C96A 7ACNA 2B3XA 1B0KA 1B0JA 1NISA 2HCUA 3H5HA 4KP1A 1NITA 4NQYA 1B0MA 3Q3WA 8ACNA 3SNPA
chains in the Genus database with same CATH topology
1AMIA 1C97A 3VBAA 3H5JA 1V7LA 1ACOA 3SN2A 3H5EA 2B3YA 1FGHA 1AMJA 1L5JA 5ACNA 6ACNA 2PKPA 4KP2A 1C96A 7ACNA 2B3XA 1B0KA 1B0JA 1NISA 2HCUA 3H5HA 4KP1A 1NITA 4NQYA 1B0MA 3Q3WA 8ACNA 3SNPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AMI A;  1C97 A;  3VBA A;  3H5J A;  1V7L A;  1ACO A;  3SN2 A;  3H5E A;  2B3Y A;  1FGH A;  1AMJ A;  1L5J A;  5ACN A;  6ACN A;  2PKP A;  4KP2 A;  1C96 A;  7ACN A;  2B3X A;  1B0K A;  1B0J A;  1NIS A;  2HCU A;  3H5H A;  4KP1 A;  1NIT A;  4NQY A;  1B0M A;  3Q3W A;  8ACN A;  3SNP A; 
#chains in the Genus database with same CATH topology
 1AMI A;  1C97 A;  3VBA A;  3H5J A;  1V7L A;  1ACO A;  3SN2 A;  3H5E A;  2B3Y A;  1FGH A;  1AMJ A;  1L5J A;  5ACN A;  6ACN A;  2PKP A;  4KP2 A;  1C96 A;  7ACN A;  2B3X A;  1B0K A;  1B0J A;  1NIS A;  2HCU A;  3H5H A;  4KP1 A;  1NIT A;  4NQY A;  1B0M A;  3Q3W A;  8ACN A;  3SNP A; 
#chains in the Genus database with same CATH homology
 1AMI A;  1C97 A;  3VBA A;  3H5J A;  1V7L A;  1ACO A;  3SN2 A;  3H5E A;  2B3Y A;  1FGH A;  1AMJ A;  1L5J A;  5ACN A;  6ACN A;  2PKP A;  4KP2 A;  1C96 A;  7ACN A;  2B3X A;  1B0K A;  1B0J A;  1NIS A;  2HCU A;  3H5H A;  4KP1 A;  1NIT A;  4NQY A;  1B0M A;  3Q3W A;  8ACN A;  3SNP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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