1D0Q | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	102
structure length	102
Chain Sequence	GHRIPEETIEAIRRGVDIVDVIGEYVQLKRQGRNYFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYELD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 102 atoms

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102 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of the zinc-binding domain of Bacillus stearothermophilus DNA primase. pubmed doi rcsb
molecule keywords	DNA PRIMASE
molecule tags	Transferase
source organism	Geobacillus stearothermophilus
total genus	27
structure length	102
sequence length	102
chains with identical sequence	B
ec nomenclature	ec 2.7.7.-:
pdb deposition date	1999-09-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01807	zf-CHC2	CHC2 zinc finger

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.580.10	Alpha Beta	Alpha-Beta Complex	DNA Primase; Chain A	Zinc finger, CHC2-type domain	1d0qA00

2AU3A 1D0QA
chains in the Genus database with same CATH superfamily

2AU3A 1D0QA
chains in the Genus database with same CATH topology

2AU3A 1D0QA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2AU3 A;  1D0Q A; 
#chains in the Genus database with same CATH topology
 2AU3 A;  1D0Q A; 
#chains in the Genus database with same CATH homology
 2AU3 A;  1D0Q A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1D0QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations