1DSZB

Structure of the rxr/rar dna-binding domain heterodimer in complex with the retinoic acid response element dr1
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
84
structure length
84
Chain Sequence
GSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Homo sapiens
publication title Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1.
pubmed doi rcsb
molecule keywords DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3')
total genus 17
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2000-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 1dszB00
3G8XA 2FF0A 1R4RA 3E00D 1KB4A 3G99A 3G9PA 1YNWA 1LATA 4CN2C 3G6QA 4HC9A 1LV3A 3DZYA 2VUSI 2VUTI 5EMPA 1GLUA 1HRAA 4CN3A 1BY4A 4ONDA 3DFXA 4GATA 1HCPA 3G6UA 1R4OA 3G9MA 2A66A 1GAUA 5KRBB 4CN5A 5GATA 4OLNA 4AA6A 1R0NB 4HC7A 4HN5A 4NQAB 6GATA 1KB2A 1HCQA 4HCAA 3G6TA 1GDCA 3DZYD 1KB6A 1RGDA 4OV7A 3G9JA 2C7AA 3DZUD 5E6AA 3G6RA 4IQRA 1LO1A 3DFVC 2KAEA 5E69A 2HANB 5CBYA 3E00A 4TMAI 5E6BA 1HLZA 3G6PA 1R0NA 5E6CA 2EBLA 4OORA 4CN3D 1R0OB 1CITA 3G9IA 5CC1A 3GATA 3M9EA 1GNFA 1GA5A 5E6DA 3VD6C 1R0OA 4HN6A 3G9OA 1RXRA 3VEKC 2NLLB 3CBBA 2VUUI 1A6YA 4CN7A 1DSZB 2NLLA 7GATA 2HANA 2GATA 3DZUA 1DSZA 5CBXA 4TNTA 5CBZA 3G97A 1GATA 3G8UA 5CC0A 1R4IA 2M9WA 5EMCA 5EMQA 1YNWB 5L0MA 3FYLA 2GDAA 2ENVA
chains in the Genus database with same CATH superfamily
3G8XA 2FF0A 1R4RA 3E00D 1KB4A 3G99A 3G9PA 1YNWA 1LATA 4CN2C 3G6QA 4HC9A 1LV3A 3DZYA 2VUSI 2VUTI 5EMPA 1GLUA 1HRAA 2DS8A 4CN3A 1BY4A 4ONDA 3DFXA 4GATA 1HCPA 3G6UA 1R4OA 3G9MA 2A66A 1GAUA 5KRBB 4CN5A 5GATA 4OLNA 4AA6A 1R0NB 4HC7A 4HN5A 4NQAB 6GATA 1KB2A 1HCQA 4HCAA 3G6TA 1GDCA 3DZYD 1KB6A 3G27A 1RGDA 4OV7A 3G9JA 2C7AA 3DZUD 5E6AA 3G6RA 4IQRA 1LO1A 3DFVC 2KAEA 2DS5A 5E69A 2HANB 5CBYA 3E00A 4TMAI 5E6BA 1HLZA 3G6PA 1R0NA 5E6CA 2EBLA 4OORA 4CN3D 1R0OB 1CITA 3G9IA 5CC1A 3GATA 3M9EA 1GNFA 1GA5A 5E6DA 3VD6C 1R0OA 4HN6A 3G9OA 1RXRA 3VEKC 2NLLB 3CBBA 2VUUI 1A6YA 4CN7A 2DS6A 1DSZB 2NLLA 7GATA 2HANA 2GATA 3DZUA 1DSZA 5CBXA 4TNTA 5CBZA 3G97A 1GATA 3G8UA 5CC0A 1R4IA 2M9WA 5EMCA 5EMQA 1YNWB 5L0MA 3FYLA 2GDAA 2ENVA
chains in the Genus database with same CATH topology
3G8XA 2FF0A 1R4RA 3E00D 1KB4A 3G99A 3G9PA 1YNWA 1LATA 4CN2C 3G6QA 4HC9A 1LV3A 3DZYA 2VUSI 2VUTI 5EMPA 1GLUA 1HRAA 4CN3A 1BY4A 4ONDA 3DFXA 4GATA 1HCPA 3G6UA 1R4OA 3G9MA 2A66A 1GAUA 5KRBB 4CN5A 5GATA 4OLNA 4AA6A 1R0NB 4HC7A 4HN5A 4NQAB 6GATA 1KB2A 1HCQA 4HCAA 3G6TA 1GDCA 3DZYD 1KB6A 1RGDA 4OV7A 3G9JA 2C7AA 3DZUD 5E6AA 3G6RA 4IQRA 1LO1A 3DFVC 2KAEA 5E69A 2HANB 5CBYA 3E00A 4TMAI 5E6BA 1HLZA 3G6PA 1R0NA 5E6CA 2EBLA 4OORA 4CN3D 1R0OB 1CITA 3G9IA 5CC1A 3GATA 3M9EA 1GNFA 1GA5A 5E6DA 3VD6C 1R0OA 4HN6A 3G9OA 1RXRA 3VEKC 2NLLB 3CBBA 2VUUI 1A6YA 4CN7A 1DSZB 2NLLA 7GATA 2HANA 2GATA 3DZUA 1DSZA 5CBXA 4TNTA 5CBZA 3G97A 1GATA 3G8UA 5CC0A 1R4IA 2M9WA 5EMCA 5EMQA 1YNWB 5L0MA 3FYLA 2GDAA 2ENVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G8X A;  2FF0 A;  1R4R A;  3E00 D;  1KB4 A;  3G99 A;  3G9P A;  1YNW A;  1LAT A;  4CN2 C;  3G6Q A;  4HC9 A;  1LV3 A;  3DZY A;  2VUS I;  2VUT I;  5EMP A;  1GLU A;  1HRA A;  4CN3 A;  1BY4 A;  4OND A;  3DFX A;  4GAT A;  1HCP A;  3G6U A;  1R4O A;  3G9M A;  2A66 A;  1GAU A;  5KRB B;  4CN5 A;  5GAT A;  4OLN A;  4AA6 A;  1R0N B;  4HC7 A;  4HN5 A;  4NQA B;  6GAT A;  1KB2 A;  1HCQ A;  4HCA A;  3G6T A;  1GDC A;  3DZY D;  1KB6 A;  1RGD A;  4OV7 A;  3G9J A;  2C7A A;  3DZU D;  5E6A A;  3G6R A;  4IQR A;  1LO1 A;  3DFV C;  2KAE A;  5E69 A;  2HAN B;  5CBY A;  3E00 A;  4TMA I;  5E6B A;  1HLZ A;  3G6P A;  1R0N A;  5E6C A;  2EBL A;  4OOR A;  4CN3 D;  1R0O B;  1CIT A;  3G9I A;  5CC1 A;  3GAT A;  3M9E A;  1GNF A;  1GA5 A;  5E6D A;  3VD6 C;  1R0O A;  4HN6 A;  3G9O A;  1RXR A;  3VEK C;  2NLL B;  3CBB A;  2VUU I;  1A6Y A;  4CN7 A;  1DSZ B;  2NLL A;  7GAT A;  2HAN A;  2GAT A;  3DZU A;  1DSZ A;  5CBX A;  4TNT A;  5CBZ A;  3G97 A;  1GAT A;  3G8U A;  5CC0 A;  1R4I A;  2M9W A;  5EMC A;  5EMQ A;  1YNW B;  5L0M A;  3FYL A;  2GDA A;  2ENV A; 
#chains in the Genus database with same CATH topology
 3G8X A;  2FF0 A;  1R4R A;  3E00 D;  1KB4 A;  3G99 A;  3G9P A;  1YNW A;  1LAT A;  4CN2 C;  3G6Q A;  4HC9 A;  1LV3 A;  3DZY A;  2VUS I;  2VUT I;  5EMP A;  1GLU A;  1HRA A;  2DS8 A;  4CN3 A;  1BY4 A;  4OND A;  3DFX A;  4GAT A;  1HCP A;  3G6U A;  1R4O A;  3G9M A;  2A66 A;  1GAU A;  5KRB B;  4CN5 A;  5GAT A;  4OLN A;  4AA6 A;  1R0N B;  4HC7 A;  4HN5 A;  4NQA B;  6GAT A;  1KB2 A;  1HCQ A;  4HCA A;  3G6T A;  1GDC A;  3DZY D;  1KB6 A;  3G27 A;  1RGD A;  4OV7 A;  3G9J A;  2C7A A;  3DZU D;  5E6A A;  3G6R A;  4IQR A;  1LO1 A;  3DFV C;  2KAE A;  2DS5 A;  5E69 A;  2HAN B;  5CBY A;  3E00 A;  4TMA I;  5E6B A;  1HLZ A;  3G6P A;  1R0N A;  5E6C A;  2EBL A;  4OOR A;  4CN3 D;  1R0O B;  1CIT A;  3G9I A;  5CC1 A;  3GAT A;  3M9E A;  1GNF A;  1GA5 A;  5E6D A;  3VD6 C;  1R0O A;  4HN6 A;  3G9O A;  1RXR A;  3VEK C;  2NLL B;  3CBB A;  2VUU I;  1A6Y A;  4CN7 A;  2DS6 A;  1DSZ B;  2NLL A;  7GAT A;  2HAN A;  2GAT A;  3DZU A;  1DSZ A;  5CBX A;  4TNT A;  5CBZ A;  3G97 A;  1GAT A;  3G8U A;  5CC0 A;  1R4I A;  2M9W A;  5EMC A;  5EMQ A;  1YNW B;  5L0M A;  3FYL A;  2GDA A;  2ENV A; 
#chains in the Genus database with same CATH homology
 3G8X A;  2FF0 A;  1R4R A;  3E00 D;  1KB4 A;  3G99 A;  3G9P A;  1YNW A;  1LAT A;  4CN2 C;  3G6Q A;  4HC9 A;  1LV3 A;  3DZY A;  2VUS I;  2VUT I;  5EMP A;  1GLU A;  1HRA A;  4CN3 A;  1BY4 A;  4OND A;  3DFX A;  4GAT A;  1HCP A;  3G6U A;  1R4O A;  3G9M A;  2A66 A;  1GAU A;  5KRB B;  4CN5 A;  5GAT A;  4OLN A;  4AA6 A;  1R0N B;  4HC7 A;  4HN5 A;  4NQA B;  6GAT A;  1KB2 A;  1HCQ A;  4HCA A;  3G6T A;  1GDC A;  3DZY D;  1KB6 A;  1RGD A;  4OV7 A;  3G9J A;  2C7A A;  3DZU D;  5E6A A;  3G6R A;  4IQR A;  1LO1 A;  3DFV C;  2KAE A;  5E69 A;  2HAN B;  5CBY A;  3E00 A;  4TMA I;  5E6B A;  1HLZ A;  3G6P A;  1R0N A;  5E6C A;  2EBL A;  4OOR A;  4CN3 D;  1R0O B;  1CIT A;  3G9I A;  5CC1 A;  3GAT A;  3M9E A;  1GNF A;  1GA5 A;  5E6D A;  3VD6 C;  1R0O A;  4HN6 A;  3G9O A;  1RXR A;  3VEK C;  2NLL B;  3CBB A;  2VUU I;  1A6Y A;  4CN7 A;  1DSZ B;  2NLL A;  7GAT A;  2HAN A;  2GAT A;  3DZU A;  1DSZ A;  5CBX A;  4TNT A;  5CBZ A;  3G97 A;  1GAT A;  3G8U A;  5CC0 A;  1R4I A;  2M9W A;  5EMC A;  5EMQ A;  1YNW B;  5L0M A;  3FYL A;  2GDA A;  2ENV A; 
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