1FW3A

Outer membrane phospholipase a from escherichia coli
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
257
structure length
249
Chain Sequence
AVRGSIIANMLTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural investigations of calcium binding and its role in activity and activation of outer membrane phospholipase A from Escherichia coli.
pubmed doi rcsb
molecule tags Hydrolase, membrane protein
source organism Escherichia coli
molecule keywords OUTER MEMBRANE PHOSPHOLIPASE A
total genus 78
structure length 249
sequence length 257
chains with identical sequence B
ec nomenclature ec 3.1.1.32: Phospholipase A(1).
pdb deposition date 2000-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02253 PLA1 Phospholipase A1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.230.10 Mainly Beta Beta Barrel Outer membrane phospholipase (ompla); Chain C Phospholipase A1 1fw3A00
1QD5A 1ILDA 1QD6C 1FW3A 1FW2A 5DQXA 1IM0A 1ILZA
chains in the Genus database with same CATH superfamily
1TLWA 1TLZA 1QD5A 1ILDA 1TLYA 1QD6C 1FW3A 1FW2A 5DQXA 1IM0A 1ILZA
chains in the Genus database with same CATH topology
1QD5A 1ILDA 1QD6C 1FW3A 1FW2A 5DQXA 1IM0A 1ILZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QD5 A;  1ILD A;  1QD6 C;  1FW3 A;  1FW2 A;  5DQX A;  1IM0 A;  1ILZ A; 
#chains in the Genus database with same CATH topology
 1TLW A;  1TLZ A;  1QD5 A;  1ILD A;  1TLY A;  1QD6 C;  1FW3 A;  1FW2 A;  5DQX A;  1IM0 A;  1ILZ A; 
#chains in the Genus database with same CATH homology
 1QD5 A;  1ILD A;  1QD6 C;  1FW3 A;  1FW2 A;  5DQX A;  1IM0 A;  1ILZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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