1GDCA

Refined solution structure of the glucocorticoid receptor dna-binding domain
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (2-5)S2 (16-18)S1 (11-13)TIV4 (38-41)AH2 (56-65)TIV5 (39-42)TI2 (50-53)TIV6 (47-50)AH1 (20-29)Updating...
connected with : NaN
publication title Refined solution structure of the glucocorticoid receptor DNA-binding domain.
pubmed doi rcsb
molecule keywords GLUCOCORTICOID RECEPTOR
molecule tags Glucocorticoid receptor
source organism Rattus norvegicus
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 1994-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 1gdcA00
5KRBB 2A66A 1BY4A 1R0OA 3G6TA 3G97A 3G8UA 4CN3D 1HLZA 1R4RA 4TMAI 4HN5A 3G9MA 2GATA 3E00D 4CN5A 5EMPA 1GAUA 5E6BA 5CBYA 3DFVC 1LV3A 3VEKC 1DSZA 2ENVA 2HANA 3G8XA 4NQAB 5E6DA 5EMCA 4TNTA 4GATA 1R0NB 5GATA 3G6QA 6GATA 1HRAA 1HCPA 1YNWA 1LO1A 2M9WA 1HCQA 1LATA 5E69A 3G99A 1A6YA 5E6CA 3G9OA 3DZYA 1GNFA 1GDCA 3GATA 1CITA 3CBBA 4CN7A 3VD6C 3G9PA 4OV7A 2VUSI 3DFXA 1R4OA 1RGDA 2VUUI 1KB2A 3G9JA 1R4IA 4CN3A 4HN6A 2VUTI 2GDAA 3DZYD 3DZUA 3E00A 1DSZB 1GA5A 2FF0A 2NLLB 4HC7A 4HCAA 4ONDA 7GATA 1R0OB 4OORA 3M9EA 1RXRA 5CBXA 3G6UA 5EMQA 3G9IA 1KB6A 4CN2C 1YNWB 1R0NA 4HC9A 3DZUD 5CC0A 5CC1A 2KAEA 2C7AA 5L0MA 3G6PA 4OLNA 1KB4A 5E6AA 4AA6A 2EBLA 1GATA 3G6RA 5CBZA 4IQRA 2HANB 3FYLA 1GLUA 2NLLA
chains in the Genus database with same CATH superfamily
5KRBB 2A66A 1BY4A 2DS6A 1R0OA 3G6TA 3G97A 3G8UA 4CN3D 1HLZA 1R4RA 4TMAI 4HN5A 3G9MA 2GATA 3E00D 4CN5A 5EMPA 1GAUA 5E6BA 5CBYA 3DFVC 1LV3A 3VEKC 1DSZA 2ENVA 2HANA 3G8XA 4NQAB 5E6DA 5EMCA 4TNTA 4GATA 1R0NB 5GATA 3G6QA 6GATA 1HRAA 1HCPA 1YNWA 1LO1A 2M9WA 1HCQA 1LATA 5E69A 3G99A 1A6YA 5E6CA 3G9OA 3DZYA 1GNFA 1GDCA 3GATA 1CITA 3CBBA 4CN7A 3VD6C 3G9PA 4OV7A 2VUSI 3DFXA 1R4OA 1RGDA 2VUUI 1KB2A 3G9JA 1R4IA 4CN3A 4HN6A 2VUTI 2GDAA 3DZYD 3DZUA 3E00A 1DSZB 1GA5A 2FF0A 2NLLB 4HC7A 4HCAA 4ONDA 7GATA 1R0OB 4OORA 3M9EA 1RXRA 5CBXA 3G6UA 5EMQA 3G9IA 1KB6A 4CN2C 2DS5A 1YNWB 1R0NA 4HC9A 3DZUD 5CC0A 5CC1A 2KAEA 2C7AA 5L0MA 2DS8A 3G6PA 4OLNA 1KB4A 3G27A 5E6AA 4AA6A 2EBLA 1GATA 3G6RA 5CBZA 4IQRA 2HANB 3FYLA 1GLUA 2NLLA
chains in the Genus database with same CATH topology
5KRBB 2A66A 1BY4A 1R0OA 3G6TA 3G97A 3G8UA 4CN3D 1HLZA 1R4RA 4TMAI 4HN5A 3G9MA 2GATA 3E00D 4CN5A 5EMPA 1GAUA 5E6BA 5CBYA 3DFVC 1LV3A 3VEKC 1DSZA 2ENVA 2HANA 3G8XA 4NQAB 5E6DA 5EMCA 4TNTA 4GATA 1R0NB 5GATA 3G6QA 6GATA 1HRAA 1HCPA 1YNWA 1LO1A 2M9WA 1HCQA 1LATA 5E69A 3G99A 1A6YA 5E6CA 3G9OA 3DZYA 1GNFA 1GDCA 3GATA 1CITA 3CBBA 4CN7A 3VD6C 3G9PA 4OV7A 2VUSI 3DFXA 1R4OA 1RGDA 2VUUI 1KB2A 3G9JA 1R4IA 4CN3A 4HN6A 2VUTI 2GDAA 3DZYD 3DZUA 3E00A 1DSZB 1GA5A 2FF0A 2NLLB 4HC7A 4HCAA 4ONDA 7GATA 1R0OB 4OORA 3M9EA 1RXRA 5CBXA 3G6UA 5EMQA 3G9IA 1KB6A 4CN2C 1YNWB 1R0NA 4HC9A 3DZUD 5CC0A 5CC1A 2KAEA 2C7AA 5L0MA 3G6PA 4OLNA 1KB4A 5E6AA 4AA6A 2EBLA 1GATA 3G6RA 5CBZA 4IQRA 2HANB 3FYLA 1GLUA 2NLLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KRB B;  2A66 A;  1BY4 A;  1R0O A;  3G6T A;  3G97 A;  3G8U A;  4CN3 D;  1HLZ A;  1R4R A;  4TMA I;  4HN5 A;  3G9M A;  2GAT A;  3E00 D;  4CN5 A;  5EMP A;  1GAU A;  5E6B A;  5CBY A;  3DFV C;  1LV3 A;  3VEK C;  1DSZ A;  2ENV A;  2HAN A;  3G8X A;  4NQA B;  5E6D A;  5EMC A;  4TNT A;  4GAT A;  1R0N B;  5GAT A;  3G6Q A;  6GAT A;  1HRA A;  1HCP A;  1YNW A;  1LO1 A;  2M9W A;  1HCQ A;  1LAT A;  5E69 A;  3G99 A;  1A6Y A;  5E6C A;  3G9O A;  3DZY A;  1GNF A;  1GDC A;  3GAT A;  1CIT A;  3CBB A;  4CN7 A;  3VD6 C;  3G9P A;  4OV7 A;  2VUS I;  3DFX A;  1R4O A;  1RGD A;  2VUU I;  1KB2 A;  3G9J A;  1R4I A;  4CN3 A;  4HN6 A;  2VUT I;  2GDA A;  3DZY D;  3DZU A;  3E00 A;  1DSZ B;  1GA5 A;  2FF0 A;  2NLL B;  4HC7 A;  4HCA A;  4OND A;  7GAT A;  1R0O B;  4OOR A;  3M9E A;  1RXR A;  5CBX A;  3G6U A;  5EMQ A;  3G9I A;  1KB6 A;  4CN2 C;  1YNW B;  1R0N A;  4HC9 A;  3DZU D;  5CC0 A;  5CC1 A;  2KAE A;  2C7A A;  5L0M A;  3G6P A;  4OLN A;  1KB4 A;  5E6A A;  4AA6 A;  2EBL A;  1GAT A;  3G6R A;  5CBZ A;  4IQR A;  2HAN B;  3FYL A;  1GLU A;  2NLL A; 
#chains in the Genus database with same CATH topology
 5KRB B;  2A66 A;  1BY4 A;  2DS6 A;  1R0O A;  3G6T A;  3G97 A;  3G8U A;  4CN3 D;  1HLZ A;  1R4R A;  4TMA I;  4HN5 A;  3G9M A;  2GAT A;  3E00 D;  4CN5 A;  5EMP A;  1GAU A;  5E6B A;  5CBY A;  3DFV C;  1LV3 A;  3VEK C;  1DSZ A;  2ENV A;  2HAN A;  3G8X A;  4NQA B;  5E6D A;  5EMC A;  4TNT A;  4GAT A;  1R0N B;  5GAT A;  3G6Q A;  6GAT A;  1HRA A;  1HCP A;  1YNW A;  1LO1 A;  2M9W A;  1HCQ A;  1LAT A;  5E69 A;  3G99 A;  1A6Y A;  5E6C A;  3G9O A;  3DZY A;  1GNF A;  1GDC A;  3GAT A;  1CIT A;  3CBB A;  4CN7 A;  3VD6 C;  3G9P A;  4OV7 A;  2VUS I;  3DFX A;  1R4O A;  1RGD A;  2VUU I;  1KB2 A;  3G9J A;  1R4I A;  4CN3 A;  4HN6 A;  2VUT I;  2GDA A;  3DZY D;  3DZU A;  3E00 A;  1DSZ B;  1GA5 A;  2FF0 A;  2NLL B;  4HC7 A;  4HCA A;  4OND A;  7GAT A;  1R0O B;  4OOR A;  3M9E A;  1RXR A;  5CBX A;  3G6U A;  5EMQ A;  3G9I A;  1KB6 A;  4CN2 C;  2DS5 A;  1YNW B;  1R0N A;  4HC9 A;  3DZU D;  5CC0 A;  5CC1 A;  2KAE A;  2C7A A;  5L0M A;  2DS8 A;  3G6P A;  4OLN A;  1KB4 A;  3G27 A;  5E6A A;  4AA6 A;  2EBL A;  1GAT A;  3G6R A;  5CBZ A;  4IQR A;  2HAN B;  3FYL A;  1GLU A;  2NLL A; 
#chains in the Genus database with same CATH homology
 5KRB B;  2A66 A;  1BY4 A;  1R0O A;  3G6T A;  3G97 A;  3G8U A;  4CN3 D;  1HLZ A;  1R4R A;  4TMA I;  4HN5 A;  3G9M A;  2GAT A;  3E00 D;  4CN5 A;  5EMP A;  1GAU A;  5E6B A;  5CBY A;  3DFV C;  1LV3 A;  3VEK C;  1DSZ A;  2ENV A;  2HAN A;  3G8X A;  4NQA B;  5E6D A;  5EMC A;  4TNT A;  4GAT A;  1R0N B;  5GAT A;  3G6Q A;  6GAT A;  1HRA A;  1HCP A;  1YNW A;  1LO1 A;  2M9W A;  1HCQ A;  1LAT A;  5E69 A;  3G99 A;  1A6Y A;  5E6C A;  3G9O A;  3DZY A;  1GNF A;  1GDC A;  3GAT A;  1CIT A;  3CBB A;  4CN7 A;  3VD6 C;  3G9P A;  4OV7 A;  2VUS I;  3DFX A;  1R4O A;  1RGD A;  2VUU I;  1KB2 A;  3G9J A;  1R4I A;  4CN3 A;  4HN6 A;  2VUT I;  2GDA A;  3DZY D;  3DZU A;  3E00 A;  1DSZ B;  1GA5 A;  2FF0 A;  2NLL B;  4HC7 A;  4HCA A;  4OND A;  7GAT A;  1R0O B;  4OOR A;  3M9E A;  1RXR A;  5CBX A;  3G6U A;  5EMQ A;  3G9I A;  1KB6 A;  4CN2 C;  1YNW B;  1R0N A;  4HC9 A;  3DZU D;  5CC0 A;  5CC1 A;  2KAE A;  2C7A A;  5L0M A;  3G6P A;  4OLN A;  1KB4 A;  5E6A A;  4AA6 A;  2EBL A;  1GAT A;  3G6R A;  5CBZ A;  4IQR A;  2HAN B;  3FYL A;  1GLU A;  2NLL A; 
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