1GDCA

Refined solution structure of the glucocorticoid receptor dna-binding domain
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
72
structure length
72
Chain Sequence
LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (2-5)S2 (16-18)S1 (11-13)TIV4 (38-41)AH2 (56-65)TIV5 (39-42)TI2 (50-53)TIV6 (47-50)AH1 (20-29)Updating...
connected with : NaN
publication title Refined solution structure of the glucocorticoid receptor DNA-binding domain.
pubmed doi rcsb
molecule keywords GLUCOCORTICOID RECEPTOR
molecule tags Glucocorticoid receptor
source organism Rattus norvegicus
total genus 7
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 1994-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 1gdcA00
3G6TA 4ONDA 4HCAA 4CN7A 5CBZA 1LO1A 5GATA 5E6DA 4CN3D 4CN3A 2VUSI 1GDCA 5E69A 4IQRA 5KRBB 4GATA 3VEKC 4HN5A 1R0NA 1R0NB 5CC0A 4CN2C 3G6PA 2NLLA 2NLLB 1HRAA 7GATA 3G8XA 3G9IA 1KB6A 3M9EA 1LV3A 1GLUA 1R4OA 2EBLA 2VUUI 1GNFA 1GAUA 3DFVC 4NQAB 5CBYA 2KAEA 4HC9A 1HCPA 4TMAI 1KB2A 3G99A 5E6AA 4OV7A 5E6CA 2ENVA 3G9PA 1R0OA 3DZYD 1R0OB 3DZYA 3DFXA 1A6YA 3G6UA 5EMPA 3G6QA 2A66A 1R4RA 2C7AA 2GDAA 5L0MA 1LATA 3E00D 2GATA 1GA5A 3E00A 3GATA 1RGDA 1HLZA 5EMCA 3G9OA 2VUTI 1HCQA 1BY4A 1R4IA 2M9WA 5EMQA 1YNWA 1YNWB 4CN5A 1RXRA 3G9MA 4OLNA 2HANA 2HANB 3G9JA 5CC1A 3FYLA 6GATA 3G6RA 4OORA 5CBXA 1GATA 3CBBA 3DZUD 4AA6A 3DZUA 1CITA 3VD6C 1KB4A 3G8UA 4HC7A 2FF0A 1DSZA 1DSZB 3G97A 4HN6A 4TNTA 5E6BA
chains in the Genus database with same CATH superfamily
3G6TA 4ONDA 4HCAA 4CN7A 5CBZA 1LO1A 5GATA 5E6DA 4CN3D 4CN3A 2VUSI 1GDCA 5E69A 2DS6A 4IQRA 5KRBB 4GATA 3VEKC 4HN5A 1R0NA 1R0NB 5CC0A 4CN2C 3G6PA 2NLLA 2NLLB 1HRAA 7GATA 3G8XA 3G9IA 1KB6A 3M9EA 1LV3A 1GLUA 1R4OA 2EBLA 2VUUI 1GNFA 1GAUA 3DFVC 4NQAB 5CBYA 2KAEA 4HC9A 1HCPA 4TMAI 1KB2A 3G99A 4OV7A 5E6AA 5E6CA 2ENVA 3G9PA 1R0OA 3DZYD 1R0OB 3DZYA 3DFXA 1A6YA 3G6UA 5EMPA 3G6QA 2A66A 1R4RA 2C7AA 2GDAA 5L0MA 1LATA 3E00D 2GATA 1GA5A 3E00A 3GATA 1RGDA 1HLZA 5EMCA 3G9OA 2VUTI 1HCQA 3G27A 1BY4A 1R4IA 2M9WA 5EMQA 1YNWA 1YNWB 4CN5A 1RXRA 3G9MA 4OLNA 2DS5A 2HANA 2HANB 3G9JA 5CC1A 3FYLA 6GATA 3G6RA 4OORA 5CBXA 1GATA 3CBBA 2DS8A 3DZUD 4AA6A 3DZUA 1CITA 3VD6C 1KB4A 3G8UA 4HC7A 2FF0A 1DSZA 1DSZB 3G97A 4HN6A 4TNTA 5E6BA
chains in the Genus database with same CATH topology
3G6TA 4ONDA 4HCAA 4CN7A 5CBZA 1LO1A 5GATA 5E6DA 4CN3D 4CN3A 2VUSI 1GDCA 5E69A 4IQRA 5KRBB 4GATA 3VEKC 4HN5A 1R0NA 1R0NB 5CC0A 4CN2C 3G6PA 2NLLA 2NLLB 1HRAA 7GATA 3G8XA 3G9IA 1KB6A 3M9EA 1LV3A 1GLUA 1R4OA 2EBLA 2VUUI 1GNFA 1GAUA 3DFVC 4NQAB 5CBYA 2KAEA 4HC9A 1HCPA 4TMAI 1KB2A 3G99A 5E6AA 4OV7A 5E6CA 2ENVA 3G9PA 1R0OA 3DZYD 1R0OB 3DZYA 3DFXA 1A6YA 3G6UA 5EMPA 3G6QA 2A66A 1R4RA 2C7AA 2GDAA 5L0MA 1LATA 3E00D 2GATA 1GA5A 3E00A 3GATA 1RGDA 1HLZA 5EMCA 3G9OA 2VUTI 1HCQA 1BY4A 1R4IA 2M9WA 5EMQA 1YNWA 1YNWB 4CN5A 1RXRA 3G9MA 4OLNA 2HANA 2HANB 3G9JA 5CC1A 3FYLA 6GATA 3G6RA 4OORA 5CBXA 1GATA 3CBBA 3DZUD 4AA6A 3DZUA 1CITA 3VD6C 1KB4A 3G8UA 4HC7A 2FF0A 1DSZA 1DSZB 3G97A 4HN6A 4TNTA 5E6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G6T A;  4OND A;  4HCA A;  4CN7 A;  5CBZ A;  1LO1 A;  5GAT A;  5E6D A;  4CN3 D;  4CN3 A;  2VUS I;  1GDC A;  5E69 A;  4IQR A;  5KRB B;  4GAT A;  3VEK C;  4HN5 A;  1R0N A;  1R0N B;  5CC0 A;  4CN2 C;  3G6P A;  2NLL A;  2NLL B;  1HRA A;  7GAT A;  3G8X A;  3G9I A;  1KB6 A;  3M9E A;  1LV3 A;  1GLU A;  1R4O A;  2EBL A;  2VUU I;  1GNF A;  1GAU A;  3DFV C;  4NQA B;  5CBY A;  2KAE A;  4HC9 A;  1HCP A;  4TMA I;  1KB2 A;  3G99 A;  5E6A A;  4OV7 A;  5E6C A;  2ENV A;  3G9P A;  1R0O A;  3DZY D;  1R0O B;  3DZY A;  3DFX A;  1A6Y A;  3G6U A;  5EMP A;  3G6Q A;  2A66 A;  1R4R A;  2C7A A;  2GDA A;  5L0M A;  1LAT A;  3E00 D;  2GAT A;  1GA5 A;  3E00 A;  3GAT A;  1RGD A;  1HLZ A;  5EMC A;  3G9O A;  2VUT I;  1HCQ A;  1BY4 A;  1R4I A;  2M9W A;  5EMQ A;  1YNW A;  1YNW B;  4CN5 A;  1RXR A;  3G9M A;  4OLN A;  2HAN A;  2HAN B;  3G9J A;  5CC1 A;  3FYL A;  6GAT A;  3G6R A;  4OOR A;  5CBX A;  1GAT A;  3CBB A;  3DZU D;  4AA6 A;  3DZU A;  1CIT A;  3VD6 C;  1KB4 A;  3G8U A;  4HC7 A;  2FF0 A;  1DSZ A;  1DSZ B;  3G97 A;  4HN6 A;  4TNT A;  5E6B A; 
#chains in the Genus database with same CATH topology
 3G6T A;  4OND A;  4HCA A;  4CN7 A;  5CBZ A;  1LO1 A;  5GAT A;  5E6D A;  4CN3 D;  4CN3 A;  2VUS I;  1GDC A;  5E69 A;  2DS6 A;  4IQR A;  5KRB B;  4GAT A;  3VEK C;  4HN5 A;  1R0N A;  1R0N B;  5CC0 A;  4CN2 C;  3G6P A;  2NLL A;  2NLL B;  1HRA A;  7GAT A;  3G8X A;  3G9I A;  1KB6 A;  3M9E A;  1LV3 A;  1GLU A;  1R4O A;  2EBL A;  2VUU I;  1GNF A;  1GAU A;  3DFV C;  4NQA B;  5CBY A;  2KAE A;  4HC9 A;  1HCP A;  4TMA I;  1KB2 A;  3G99 A;  4OV7 A;  5E6A A;  5E6C A;  2ENV A;  3G9P A;  1R0O A;  3DZY D;  1R0O B;  3DZY A;  3DFX A;  1A6Y A;  3G6U A;  5EMP A;  3G6Q A;  2A66 A;  1R4R A;  2C7A A;  2GDA A;  5L0M A;  1LAT A;  3E00 D;  2GAT A;  1GA5 A;  3E00 A;  3GAT A;  1RGD A;  1HLZ A;  5EMC A;  3G9O A;  2VUT I;  1HCQ A;  3G27 A;  1BY4 A;  1R4I A;  2M9W A;  5EMQ A;  1YNW A;  1YNW B;  4CN5 A;  1RXR A;  3G9M A;  4OLN A;  2DS5 A;  2HAN A;  2HAN B;  3G9J A;  5CC1 A;  3FYL A;  6GAT A;  3G6R A;  4OOR A;  5CBX A;  1GAT A;  3CBB A;  2DS8 A;  3DZU D;  4AA6 A;  3DZU A;  1CIT A;  3VD6 C;  1KB4 A;  3G8U A;  4HC7 A;  2FF0 A;  1DSZ A;  1DSZ B;  3G97 A;  4HN6 A;  4TNT A;  5E6B A; 
#chains in the Genus database with same CATH homology
 3G6T A;  4OND A;  4HCA A;  4CN7 A;  5CBZ A;  1LO1 A;  5GAT A;  5E6D A;  4CN3 D;  4CN3 A;  2VUS I;  1GDC A;  5E69 A;  4IQR A;  5KRB B;  4GAT A;  3VEK C;  4HN5 A;  1R0N A;  1R0N B;  5CC0 A;  4CN2 C;  3G6P A;  2NLL A;  2NLL B;  1HRA A;  7GAT A;  3G8X A;  3G9I A;  1KB6 A;  3M9E A;  1LV3 A;  1GLU A;  1R4O A;  2EBL A;  2VUU I;  1GNF A;  1GAU A;  3DFV C;  4NQA B;  5CBY A;  2KAE A;  4HC9 A;  1HCP A;  4TMA I;  1KB2 A;  3G99 A;  5E6A A;  4OV7 A;  5E6C A;  2ENV A;  3G9P A;  1R0O A;  3DZY D;  1R0O B;  3DZY A;  3DFX A;  1A6Y A;  3G6U A;  5EMP A;  3G6Q A;  2A66 A;  1R4R A;  2C7A A;  2GDA A;  5L0M A;  1LAT A;  3E00 D;  2GAT A;  1GA5 A;  3E00 A;  3GAT A;  1RGD A;  1HLZ A;  5EMC A;  3G9O A;  2VUT I;  1HCQ A;  1BY4 A;  1R4I A;  2M9W A;  5EMQ A;  1YNW A;  1YNW B;  4CN5 A;  1RXR A;  3G9M A;  4OLN A;  2HAN A;  2HAN B;  3G9J A;  5CC1 A;  3FYL A;  6GAT A;  3G6R A;  4OOR A;  5CBX A;  1GAT A;  3CBB A;  3DZU D;  4AA6 A;  3DZU A;  1CIT A;  3VD6 C;  1KB4 A;  3G8U A;  4HC7 A;  2FF0 A;  1DSZ A;  1DSZ B;  3G97 A;  4HN6 A;  4TNT A;  5E6B A; 
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