1GLU | Genus

Total Genus 16

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	81
structure length	81
Chain Sequence	MKPARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription/dna
source organism	Rattus norvegicus
publication title	Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA. pubmed doi rcsb
molecule keywords	DNA (5'-D(CPCPAPGPAPAPCPAPTPCPGPAPTPGPTPTP*C
total genus	16
structure length	81
sequence length	81
chains with identical sequence	B
ec nomenclature
pdb deposition date	1992-08-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	1gluA00

3G8XA 1GAUA 1KB6A 2VUTI 5E6AA 1LO1A 1R0OA 1R0NB 2VUSI 3G9MA 3G99A 1BY4A 4CN3D 2C7AA 1GATA 1GNFA 4ONDA 1GDCA 5CC0A 2EBLA 4OLNA 1KB4A 1R4OA 7GATA 1R4RA 1CITA 5L0MA 3DZUA 2A66A 3DZYD 5E6DA 1HCPA 4CN3A 2VUUI 3G9JA 3CBBA 1GA5A 2NLLB 3G6PA 4CN7A 4OV7A 3G6QA 4CN2C 3E00A 1DSZB 5CBXA 3G8UA 4CN5A 1GLUA 2NLLA 1RXRA 3DFVC 6GATA 3G6RA 1LV3A 1DSZA 5CC1A 2FF0A 5GATA 5CBZA 4HCAA 1HRAA 2GATA 1LATA 3FYLA 4HC9A 5EMQA 5E69A 5EMCA 1R4IA 4HN5A 4GATA 3G9OA 5E6BA 1RGDA 1YNWB 2HANB 5CBYA 3VEKC 2KAEA 2ENVA 5KRBB 4HC7A 4HN6A 3DZUD 4TMAI 1YNWA 2HANA 3DZYA 3DFXA 4AA6A 2GDAA 4TNTA 4NQAB 2M9WA 3G9IA 5EMPA 3G9PA 3VD6C 3E00D 1R0NA 3G97A 4OORA 5E6CA 1A6YA 1R0OB 4IQRA 3M9EA 1HLZA 3G6TA 3G6UA 3GATA 1HCQA 1KB2A
chains in the Genus database with same CATH superfamily

3G8XA 1GAUA 2DS6A 1KB6A 2VUTI 5E6AA 1LO1A 1R0OA 1R0NB 2VUSI 3G9MA 3G99A 1BY4A 4CN3D 2C7AA 1GATA 1GNFA 4ONDA 1GDCA 5CC0A 2EBLA 4OLNA 1KB4A 1R4OA 7GATA 1R4RA 1CITA 5L0MA 3DZUA 2A66A 3DZYD 5E6DA 1HCPA 4CN3A 2VUUI 3G9JA 3CBBA 1GA5A 2NLLB 3G6PA 4CN7A 4OV7A 3G6QA 4CN2C 3E00A 1DSZB 5CBXA 3G8UA 4CN5A 1GLUA 2NLLA 1RXRA 3DFVC 6GATA 3G6RA 1LV3A 1DSZA 5CC1A 2FF0A 5GATA 5CBZA 4HCAA 1HRAA 2GATA 1LATA 3FYLA 4HC9A 5EMQA 5E69A 5EMCA 1R4IA 4HN5A 4GATA 3G9OA 5E6BA 1RGDA 1YNWB 2HANB 3G27A 5CBYA 2DS8A 3VEKC 2DS5A 2KAEA 2ENVA 5KRBB 4HC7A 4HN6A 3DZUD 4TMAI 1YNWA 2HANA 3DZYA 3DFXA 4AA6A 2GDAA 4TNTA 4NQAB 2M9WA 3G9IA 5EMPA 3G9PA 3VD6C 3E00D 1R0NA 3G97A 4OORA 5E6CA 1A6YA 1R0OB 4IQRA 3M9EA 1HLZA 3G6TA 3G6UA 3GATA 1HCQA 1KB2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3G8X A;  1GAU A;  1KB6 A;  2VUT I;  5E6A A;  1LO1 A;  1R0O A;  1R0N B;  2VUS I;  3G9M A;  3G99 A;  1BY4 A;  4CN3 D;  2C7A A;  1GAT A;  1GNF A;  4OND A;  1GDC A;  5CC0 A;  2EBL A;  4OLN A;  1KB4 A;  1R4O A;  7GAT A;  1R4R A;  1CIT A;  5L0M A;  3DZU A;  2A66 A;  3DZY D;  5E6D A;  1HCP A;  4CN3 A;  2VUU I;  3G9J A;  3CBB A;  1GA5 A;  2NLL B;  3G6P A;  4CN7 A;  4OV7 A;  3G6Q A;  4CN2 C;  3E00 A;  1DSZ B;  5CBX A;  3G8U A;  4CN5 A;  1GLU A;  2NLL A;  1RXR A;  3DFV C;  6GAT A;  3G6R A;  1LV3 A;  1DSZ A;  5CC1 A;  2FF0 A;  5GAT A;  5CBZ A;  4HCA A;  1HRA A;  2GAT A;  1LAT A;  3FYL A;  4HC9 A;  5EMQ A;  5E69 A;  5EMC A;  1R4I A;  4HN5 A;  4GAT A;  3G9O A;  5E6B A;  1RGD A;  1YNW B;  2HAN B;  5CBY A;  3VEK C;  2KAE A;  2ENV A;  5KRB B;  4HC7 A;  4HN6 A;  3DZU D;  4TMA I;  1YNW A;  2HAN A;  3DZY A;  3DFX A;  4AA6 A;  2GDA A;  4TNT A;  4NQA B;  2M9W A;  3G9I A;  5EMP A;  3G9P A;  3VD6 C;  3E00 D;  1R0N A;  3G97 A;  4OOR A;  5E6C A;  1A6Y A;  1R0O B;  4IQR A;  3M9E A;  1HLZ A;  3G6T A;  3G6U A;  3GAT A;  1HCQ A;  1KB2 A; 
#chains in the Genus database with same CATH topology
 3G8X A;  1GAU A;  2DS6 A;  1KB6 A;  2VUT I;  5E6A A;  1LO1 A;  1R0O A;  1R0N B;  2VUS I;  3G9M A;  3G99 A;  1BY4 A;  4CN3 D;  2C7A A;  1GAT A;  1GNF A;  4OND A;  1GDC A;  5CC0 A;  2EBL A;  4OLN A;  1KB4 A;  1R4O A;  7GAT A;  1R4R A;  1CIT A;  5L0M A;  3DZU A;  2A66 A;  3DZY D;  5E6D A;  1HCP A;  4CN3 A;  2VUU I;  3G9J A;  3CBB A;  1GA5 A;  2NLL B;  3G6P A;  4CN7 A;  4OV7 A;  3G6Q A;  4CN2 C;  3E00 A;  1DSZ B;  5CBX A;  3G8U A;  4CN5 A;  1GLU A;  2NLL A;  1RXR A;  3DFV C;  6GAT A;  3G6R A;  1LV3 A;  1DSZ A;  5CC1 A;  2FF0 A;  5GAT A;  5CBZ A;  4HCA A;  1HRA A;  2GAT A;  1LAT A;  3FYL A;  4HC9 A;  5EMQ A;  5E69 A;  5EMC A;  1R4I A;  4HN5 A;  4GAT A;  3G9O A;  5E6B A;  1RGD A;  1YNW B;  2HAN B;  3G27 A;  5CBY A;  2DS8 A;  3VEK C;  2DS5 A;  2KAE A;  2ENV A;  5KRB B;  4HC7 A;  4HN6 A;  3DZU D;  4TMA I;  1YNW A;  2HAN A;  3DZY A;  3DFX A;  4AA6 A;  2GDA A;  4TNT A;  4NQA B;  2M9W A;  3G9I A;  5EMP A;  3G9P A;  3VD6 C;  3E00 D;  1R0N A;  3G97 A;  4OOR A;  5E6C A;  1A6Y A;  1R0O B;  4IQR A;  3M9E A;  1HLZ A;  3G6T A;  3G6U A;  3GAT A;  1HCQ A;  1KB2 A; 
#chains in the Genus database with same CATH homology
 3G8X A;  1GAU A;  1KB6 A;  2VUT I;  5E6A A;  1LO1 A;  1R0O A;  1R0N B;  2VUS I;  3G9M A;  3G99 A;  1BY4 A;  4CN3 D;  2C7A A;  1GAT A;  1GNF A;  4OND A;  1GDC A;  5CC0 A;  2EBL A;  4OLN A;  1KB4 A;  1R4O A;  7GAT A;  1R4R A;  1CIT A;  5L0M A;  3DZU A;  2A66 A;  3DZY D;  5E6D A;  1HCP A;  4CN3 A;  2VUU I;  3G9J A;  3CBB A;  1GA5 A;  2NLL B;  3G6P A;  4CN7 A;  4OV7 A;  3G6Q A;  4CN2 C;  3E00 A;  1DSZ B;  5CBX A;  3G8U A;  4CN5 A;  1GLU A;  2NLL A;  1RXR A;  3DFV C;  6GAT A;  3G6R A;  1LV3 A;  1DSZ A;  5CC1 A;  2FF0 A;  5GAT A;  5CBZ A;  4HCA A;  1HRA A;  2GAT A;  1LAT A;  3FYL A;  4HC9 A;  5EMQ A;  5E69 A;  5EMC A;  1R4I A;  4HN5 A;  4GAT A;  3G9O A;  5E6B A;  1RGD A;  1YNW B;  2HAN B;  5CBY A;  3VEK C;  2KAE A;  2ENV A;  5KRB B;  4HC7 A;  4HN6 A;  3DZU D;  4TMA I;  1YNW A;  2HAN A;  3DZY A;  3DFX A;  4AA6 A;  2GDA A;  4TNT A;  4NQA B;  2M9W A;  3G9I A;  5EMP A;  3G9P A;  3VD6 C;  3E00 D;  1R0N A;  3G97 A;  4OOR A;  5E6C A;  1A6Y A;  1R0O B;  4IQR A;  3M9E A;  1HLZ A;  3G6T A;  3G6U A;  3GAT A;  1HCQ A;  1KB2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1GLUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations