1HLQA

Crystal structure of rhodoferax fermentans high potential iron-sulfur protein refined to 1.45 a
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
75
structure length
75
Chain Sequence
AAPLVAETDANAKSLGYVADTTKADKTKYPKHTKDQSCSTCALYQGKTAPQGACPLFAGKEVVAKGWCSAWAKKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords HIGH-POTENTIAL IRON-SULFUR PROTEIN
publication title Structure of Rhodoferax fermentans high-potential iron-sulfur protein solved by MAD.
pubmed doi rcsb
total genus 17
structure length 75
sequence length 75
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2000-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01355 HIPIP High potential iron-sulfur protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.490.10 Few Secondary Structures Irregular High-Potential Iron-Sulfur Protein; Chain A High potential iron-sulphur protein 1hlqA00
1HPIA 1JS2A 1HIPA 3A39A 2FLAA 2HIPA 1HRQA 1EYTA 5D8VA 1B0YA 1PIJA 1PIHA 1CKUA 1NOEA 3H31A 1IUAA 3A38A 1HLQA 1NEHA 1HRRA 1ISUA 3HIPA 2AMSA
chains in the Genus database with same CATH superfamily
1HPIA 1JS2A 1HIPA 3A39A 2FLAA 2HIPA 1HRQA 1EYTA 5D8VA 1B0YA 1PIJA 1PIHA 1CKUA 1NOEA 3H31A 1IUAA 3A38A 1HLQA 1NEHA 1HRRA 1ISUA 3HIPA 2AMSA
chains in the Genus database with same CATH topology
1HPIA 1JS2A 1HIPA 3A39A 2FLAA 2HIPA 1HRQA 1EYTA 5D8VA 1B0YA 1PIJA 1PIHA 1CKUA 1NOEA 3H31A 1IUAA 3A38A 1HLQA 1NEHA 1HRRA 1ISUA 3HIPA 2AMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HPI A;  1JS2 A;  1HIP A;  3A39 A;  2FLA A;  2HIP A;  1HRQ A;  1EYT A;  5D8V A;  1B0Y A;  1PIJ A;  1PIH A;  1CKU A;  1NOE A;  3H31 A;  1IUA A;  3A38 A;  1HLQ A;  1NEH A;  1HRR A;  1ISU A;  3HIP A;  2AMS A; 
#chains in the Genus database with same CATH topology
 1HPI A;  1JS2 A;  1HIP A;  3A39 A;  2FLA A;  2HIP A;  1HRQ A;  1EYT A;  5D8V A;  1B0Y A;  1PIJ A;  1PIH A;  1CKU A;  1NOE A;  3H31 A;  1IUA A;  3A38 A;  1HLQ A;  1NEH A;  1HRR A;  1ISU A;  3HIP A;  2AMS A; 
#chains in the Genus database with same CATH homology
 1HPI A;  1JS2 A;  1HIP A;  3A39 A;  2FLA A;  2HIP A;  1HRQ A;  1EYT A;  5D8V A;  1B0Y A;  1PIJ A;  1PIH A;  1CKU A;  1NOE A;  3H31 A;  1IUA A;  3A38 A;  1HLQ A;  1NEH A;  1HRR A;  1ISU A;  3HIP A;  2AMS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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