1J1V | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	94
structure length	94
Chain Sequence	VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 94 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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94 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Replication/dna
source organism	Escherichia coli
publication title	Structural basis of replication origin recognition by the DnaA protein pubmed doi rcsb
molecule keywords	5'-D(TPGPTPTPAPTPCPCPAPCPAPGP*G)-3'
total genus	35
structure length	94
sequence length	94
ec nomenclature
pdb deposition date	2002-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08299	Bac_DnaA_C	Bacterial dnaA protein helix-turn-helix

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1750.10	Mainly Alpha	Orthogonal Bundle	Chromosomal Replication Initiator Protein Dnaa; Chain: A;	Chromosomal Replication Initiator Protein Dnaa; Chain: A;	1j1vA00

1J1VA 2HCBA 3PVVA 1L8QA 3R8FA 3PVPA
chains in the Genus database with same CATH superfamily

1J1VA 2HCBA 3PVVA 1L8QA 3R8FA 3PVPA
chains in the Genus database with same CATH topology

1J1VA 2HCBA 3PVVA 1L8QA 3R8FA 3PVPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1J1V A;  2HCB A;  3PVV A;  1L8Q A;  3R8F A;  3PVP A; 
#chains in the Genus database with same CATH topology
 1J1V A;  2HCB A;  3PVV A;  1L8Q A;  3R8F A;  3PVP A; 
#chains in the Genus database with same CATH homology
 1J1V A;  2HCB A;  3PVV A;  1L8Q A;  3R8F A;  3PVP A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1J1VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations