1KB2 | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	89
structure length	89
Chain Sequence	RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 89 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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89 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Homo sapiens
publication title	Structural basis of VDR-DNA interactions on direct repeat response elements. pubmed doi rcsb
molecule keywords	5'-D(CPAPCPGPGPTPTPCPAPCPGPAPGPGPTPTPCPA)-
total genus	24
structure length	89
sequence length	89
chains with identical sequence	B
ec nomenclature
pdb deposition date	2001-11-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	1kb2A00

3G97A 2VUTI 7GATA 3G8XA 5CBZA 5GATA 4CN2C 2HANA 1R0OA 1YNWA 1R0NA 4OV7A 3E00A 3DFXA 2ENVA 3DZUA 2A66A 3DZUD 2HANB 4TMAI 1R0OB 1YNWB 5CC1A 1R0NB 3GATA 1A6YA 5E6BA 4GATA 2C7AA 4AA6A 4OLNA 3VEKC 4HN5A 1KB6A 1GAUA 1CITA 1R4RA 2EBLA 5E6DA 4CN7A 1DSZA 5KRBB 1HRAA 4HC7A 1RXRA 1LO1A 5CC0A 5CBXA 4IQRA 1LV3A 4NQAB 2GATA 1BY4A 2GDAA 1DSZB 1GDCA 5E6AA 5EMQA 3G9IA 1KB4A 1KB2A 6GATA 1RGDA 3G6UA 3G9PA 4CN3D 2VUSI 3DFVC 3DZYD 4TNTA 5L0MA 3M9EA 4ONDA 3G6TA 3G6RA 1GLUA 4HCAA 1LATA 5EMPA 4HN6A 3G99A 1GA5A 1HCPA 5E69A 3G6QA 3VD6C 4OORA 3G9MA 3G9JA 1R4IA 4HC9A 5E6CA 3FYLA 3G9OA 1HLZA 4CN5A 3CBBA 1HCQA 5EMCA 4CN3A 2M9WA 2NLLA 3E00D 3DZYA 1GNFA 1GATA 5CBYA 2VUUI 3G6PA 3G8UA 2FF0A 2KAEA 2NLLB 1R4OA
chains in the Genus database with same CATH superfamily

3G97A 2VUTI 7GATA 3G8XA 5CBZA 5GATA 4CN2C 2HANA 1R0OA 1YNWA 3E00A 4OV7A 1R0NA 3DFXA 2ENVA 3DZUA 2A66A 3DZUD 2HANB 4TMAI 1R0OB 1YNWB 5CC1A 1R0NB 3GATA 1A6YA 5E6BA 4GATA 2C7AA 4AA6A 4OLNA 3VEKC 2DS6A 4HN5A 1KB6A 2DS8A 1GAUA 1CITA 1R4RA 2EBLA 5E6DA 4CN7A 1DSZA 5KRBB 1HRAA 4HC7A 1RXRA 1LO1A 5CC0A 5CBXA 4IQRA 1LV3A 4NQAB 2GATA 1BY4A 2GDAA 1DSZB 1GDCA 5E6AA 5EMQA 3G9IA 2DS5A 1KB4A 1KB2A 6GATA 1RGDA 3G6UA 3G9PA 4CN3D 2VUSI 3DFVC 3DZYD 4TNTA 5L0MA 3M9EA 4ONDA 3G6TA 3G6RA 1GLUA 4HCAA 1LATA 5EMPA 4HN6A 3G99A 1GA5A 1HCPA 5E69A 3G6QA 3VD6C 4OORA 3G9MA 3G9JA 1R4IA 4HC9A 5E6CA 3FYLA 3G9OA 1HLZA 4CN5A 3CBBA 1HCQA 5EMCA 4CN3A 2M9WA 2NLLA 3E00D 3DZYA 1GNFA 1GATA 5CBYA 2VUUI 3G27A 3G6PA 3G8UA 2FF0A 2KAEA 2NLLB 1R4OA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3G97 A;  2VUT I;  7GAT A;  3G8X A;  5CBZ A;  5GAT A;  4CN2 C;  2HAN A;  1R0O A;  1YNW A;  1R0N A;  4OV7 A;  3E00 A;  3DFX A;  2ENV A;  3DZU A;  2A66 A;  3DZU D;  2HAN B;  4TMA I;  1R0O B;  1YNW B;  5CC1 A;  1R0N B;  3GAT A;  1A6Y A;  5E6B A;  4GAT A;  2C7A A;  4AA6 A;  4OLN A;  3VEK C;  4HN5 A;  1KB6 A;  1GAU A;  1CIT A;  1R4R A;  2EBL A;  5E6D A;  4CN7 A;  1DSZ A;  5KRB B;  1HRA A;  4HC7 A;  1RXR A;  1LO1 A;  5CC0 A;  5CBX A;  4IQR A;  1LV3 A;  4NQA B;  2GAT A;  1BY4 A;  2GDA A;  1DSZ B;  1GDC A;  5E6A A;  5EMQ A;  3G9I A;  1KB4 A;  1KB2 A;  6GAT A;  1RGD A;  3G6U A;  3G9P A;  4CN3 D;  2VUS I;  3DFV C;  3DZY D;  4TNT A;  5L0M A;  3M9E A;  4OND A;  3G6T A;  3G6R A;  1GLU A;  4HCA A;  1LAT A;  5EMP A;  4HN6 A;  3G99 A;  1GA5 A;  1HCP A;  5E69 A;  3G6Q A;  3VD6 C;  4OOR A;  3G9M A;  3G9J A;  1R4I A;  4HC9 A;  5E6C A;  3FYL A;  3G9O A;  1HLZ A;  4CN5 A;  3CBB A;  1HCQ A;  5EMC A;  4CN3 A;  2M9W A;  2NLL A;  3E00 D;  3DZY A;  1GNF A;  1GAT A;  5CBY A;  2VUU I;  3G6P A;  3G8U A;  2FF0 A;  2KAE A;  2NLL B;  1R4O A; 
#chains in the Genus database with same CATH topology
 3G97 A;  2VUT I;  7GAT A;  3G8X A;  5CBZ A;  5GAT A;  4CN2 C;  2HAN A;  1R0O A;  1YNW A;  3E00 A;  4OV7 A;  1R0N A;  3DFX A;  2ENV A;  3DZU A;  2A66 A;  3DZU D;  2HAN B;  4TMA I;  1R0O B;  1YNW B;  5CC1 A;  1R0N B;  3GAT A;  1A6Y A;  5E6B A;  4GAT A;  2C7A A;  4AA6 A;  4OLN A;  3VEK C;  2DS6 A;  4HN5 A;  1KB6 A;  2DS8 A;  1GAU A;  1CIT A;  1R4R A;  2EBL A;  5E6D A;  4CN7 A;  1DSZ A;  5KRB B;  1HRA A;  4HC7 A;  1RXR A;  1LO1 A;  5CC0 A;  5CBX A;  4IQR A;  1LV3 A;  4NQA B;  2GAT A;  1BY4 A;  2GDA A;  1DSZ B;  1GDC A;  5E6A A;  5EMQ A;  3G9I A;  2DS5 A;  1KB4 A;  1KB2 A;  6GAT A;  1RGD A;  3G6U A;  3G9P A;  4CN3 D;  2VUS I;  3DFV C;  3DZY D;  4TNT A;  5L0M A;  3M9E A;  4OND A;  3G6T A;  3G6R A;  1GLU A;  4HCA A;  1LAT A;  5EMP A;  4HN6 A;  3G99 A;  1GA5 A;  1HCP A;  5E69 A;  3G6Q A;  3VD6 C;  4OOR A;  3G9M A;  3G9J A;  1R4I A;  4HC9 A;  5E6C A;  3FYL A;  3G9O A;  1HLZ A;  4CN5 A;  3CBB A;  1HCQ A;  5EMC A;  4CN3 A;  2M9W A;  2NLL A;  3E00 D;  3DZY A;  1GNF A;  1GAT A;  5CBY A;  2VUU I;  3G27 A;  3G6P A;  3G8U A;  2FF0 A;  2KAE A;  2NLL B;  1R4O A; 
#chains in the Genus database with same CATH homology
 3G97 A;  2VUT I;  7GAT A;  3G8X A;  5CBZ A;  5GAT A;  4CN2 C;  2HAN A;  1R0O A;  1YNW A;  1R0N A;  4OV7 A;  3E00 A;  3DFX A;  2ENV A;  3DZU A;  2A66 A;  3DZU D;  2HAN B;  4TMA I;  1R0O B;  1YNW B;  5CC1 A;  1R0N B;  3GAT A;  1A6Y A;  5E6B A;  4GAT A;  2C7A A;  4AA6 A;  4OLN A;  3VEK C;  4HN5 A;  1KB6 A;  1GAU A;  1CIT A;  1R4R A;  2EBL A;  5E6D A;  4CN7 A;  1DSZ A;  5KRB B;  1HRA A;  4HC7 A;  1RXR A;  1LO1 A;  5CC0 A;  5CBX A;  4IQR A;  1LV3 A;  4NQA B;  2GAT A;  1BY4 A;  2GDA A;  1DSZ B;  1GDC A;  5E6A A;  5EMQ A;  3G9I A;  1KB4 A;  1KB2 A;  6GAT A;  1RGD A;  3G6U A;  3G9P A;  4CN3 D;  2VUS I;  3DFV C;  3DZY D;  4TNT A;  5L0M A;  3M9E A;  4OND A;  3G6T A;  3G6R A;  1GLU A;  4HCA A;  1LAT A;  5EMP A;  4HN6 A;  3G99 A;  1GA5 A;  1HCP A;  5E69 A;  3G6Q A;  3VD6 C;  4OOR A;  3G9M A;  3G9J A;  1R4I A;  4HC9 A;  5E6C A;  3FYL A;  3G9O A;  1HLZ A;  4CN5 A;  3CBB A;  1HCQ A;  5EMC A;  4CN3 A;  2M9W A;  2NLL A;  3E00 D;  3DZY A;  1GNF A;  1GAT A;  5CBY A;  2VUU I;  3G6P A;  3G8U A;  2FF0 A;  2KAE A;  2NLL B;  1R4O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KB2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations