1KB6 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	94
structure length	94
Chain Sequence	PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 94 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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94 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Homo sapiens
publication title	Structural basis of VDR-DNA interactions on direct repeat response elements. pubmed doi rcsb
molecule keywords	5'-D(CPAPCPGPGPGPTPGPAPAPTPGPAPGPGPAPCPA)-
total genus	27
structure length	94
sequence length	94
chains with identical sequence	B
ec nomenclature
pdb deposition date	2001-11-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	1kb6A00

4CN3A 4TMAI 5CBXA 3G6RA 3DFXA 3DFVC 4HC7A 5L0MA 1GNFA 3E00A 2GDAA 1HCQA 1KB4A 3G97A 5CBZA 3G9OA 2VUUI 3DZYD 3VD6C 3G8XA 5E6AA 3G99A 1KB6A 4OV7A 1GATA 4HN6A 4OORA 3E00D 3VEKC 1GA5A 3DZYA 4OLNA 1R4OA 2NLLB 3G6QA 2HANB 3CBBA 1GLUA 3G6TA 1HCPA 1CITA 1HLZA 1BY4A 3G9MA 5KRBB 5EMCA 1GDCA 2KAEA 5E6BA 5E69A 5E6CA 5CC1A 5E6DA 3G8UA 2EBLA 4IQRA 1R0NB 3G6PA 1DSZB 2HANA 2FF0A 1YNWA 4CN7A 3G9IA 1LO1A 2GATA 3M9EA 2ENVA 1RXRA 1R0NA 1R0OB 2C7AA 3G9PA 1DSZA 4AA6A 3DZUA 5CC0A 4HC9A 1R4IA 4TNTA 2M9WA 2NLLA 5GATA 2VUSI 3G6UA 1R4RA 5EMPA 3DZUD 5CBYA 3FYLA 4GATA 5EMQA 4ONDA 4HCAA 3GATA 3G9JA 2VUTI 6GATA 4CN5A 4HN5A 1KB2A 4CN2C 1LATA 4CN3D 1RGDA 7GATA 2A66A 1GAUA 1A6YA 4NQAB 1HRAA 1LV3A 1R0OA 1YNWB
chains in the Genus database with same CATH superfamily

4CN3A 4TMAI 5CBXA 3G6RA 3DFXA 3DFVC 4HC7A 5L0MA 1GNFA 3E00A 2GDAA 1HCQA 1KB4A 3G97A 5CBZA 3G9OA 2VUUI 3DZYD 3VD6C 3G8XA 5E6AA 3G99A 1KB6A 4OV7A 1GATA 4HN6A 4OORA 3E00D 3VEKC 1GA5A 3DZYA 4OLNA 1R4OA 2NLLB 3G6QA 2HANB 3CBBA 1GLUA 3G6TA 1HCPA 1CITA 1HLZA 1BY4A 3G9MA 5KRBB 5EMCA 1GDCA 2KAEA 5E6BA 5E69A 5E6CA 5CC1A 5E6DA 3G8UA 2EBLA 4IQRA 1R0NB 3G6PA 1DSZB 2HANA 2FF0A 1YNWA 4CN7A 3G9IA 2DS8A 1LO1A 2GATA 3M9EA 2ENVA 1RXRA 2DS5A 1R0NA 1R0OB 2C7AA 3G9PA 1DSZA 4AA6A 3DZUA 5CC0A 4HC9A 1R4IA 4TNTA 2M9WA 2NLLA 5GATA 2VUSI 3G6UA 1R4RA 5EMPA 3DZUD 5CBYA 3FYLA 4GATA 5EMQA 4ONDA 4HCAA 3GATA 3G9JA 2VUTI 6GATA 4CN5A 4HN5A 1KB2A 3G27A 4CN2C 1LATA 4CN3D 1RGDA 7GATA 2A66A 1GAUA 1A6YA 4NQAB 1HRAA 2DS6A 1LV3A 1R0OA 1YNWB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4CN3 A;  4TMA I;  5CBX A;  3G6R A;  3DFX A;  3DFV C;  4HC7 A;  5L0M A;  1GNF A;  3E00 A;  2GDA A;  1HCQ A;  1KB4 A;  3G97 A;  5CBZ A;  3G9O A;  2VUU I;  3DZY D;  3VD6 C;  3G8X A;  5E6A A;  3G99 A;  1KB6 A;  4OV7 A;  1GAT A;  4HN6 A;  4OOR A;  3E00 D;  3VEK C;  1GA5 A;  3DZY A;  4OLN A;  1R4O A;  2NLL B;  3G6Q A;  2HAN B;  3CBB A;  1GLU A;  3G6T A;  1HCP A;  1CIT A;  1HLZ A;  1BY4 A;  3G9M A;  5KRB B;  5EMC A;  1GDC A;  2KAE A;  5E6B A;  5E69 A;  5E6C A;  5CC1 A;  5E6D A;  3G8U A;  2EBL A;  4IQR A;  1R0N B;  3G6P A;  1DSZ B;  2HAN A;  2FF0 A;  1YNW A;  4CN7 A;  3G9I A;  1LO1 A;  2GAT A;  3M9E A;  2ENV A;  1RXR A;  1R0N A;  1R0O B;  2C7A A;  3G9P A;  1DSZ A;  4AA6 A;  3DZU A;  5CC0 A;  4HC9 A;  1R4I A;  4TNT A;  2M9W A;  2NLL A;  5GAT A;  2VUS I;  3G6U A;  1R4R A;  5EMP A;  3DZU D;  5CBY A;  3FYL A;  4GAT A;  5EMQ A;  4OND A;  4HCA A;  3GAT A;  3G9J A;  2VUT I;  6GAT A;  4CN5 A;  4HN5 A;  1KB2 A;  4CN2 C;  1LAT A;  4CN3 D;  1RGD A;  7GAT A;  2A66 A;  1GAU A;  1A6Y A;  4NQA B;  1HRA A;  1LV3 A;  1R0O A;  1YNW B; 
#chains in the Genus database with same CATH topology
 4CN3 A;  4TMA I;  5CBX A;  3G6R A;  3DFX A;  3DFV C;  4HC7 A;  5L0M A;  1GNF A;  3E00 A;  2GDA A;  1HCQ A;  1KB4 A;  3G97 A;  5CBZ A;  3G9O A;  2VUU I;  3DZY D;  3VD6 C;  3G8X A;  5E6A A;  3G99 A;  1KB6 A;  4OV7 A;  1GAT A;  4HN6 A;  4OOR A;  3E00 D;  3VEK C;  1GA5 A;  3DZY A;  4OLN A;  1R4O A;  2NLL B;  3G6Q A;  2HAN B;  3CBB A;  1GLU A;  3G6T A;  1HCP A;  1CIT A;  1HLZ A;  1BY4 A;  3G9M A;  5KRB B;  5EMC A;  1GDC A;  2KAE A;  5E6B A;  5E69 A;  5E6C A;  5CC1 A;  5E6D A;  3G8U A;  2EBL A;  4IQR A;  1R0N B;  3G6P A;  1DSZ B;  2HAN A;  2FF0 A;  1YNW A;  4CN7 A;  3G9I A;  2DS8 A;  1LO1 A;  2GAT A;  3M9E A;  2ENV A;  1RXR A;  2DS5 A;  1R0N A;  1R0O B;  2C7A A;  3G9P A;  1DSZ A;  4AA6 A;  3DZU A;  5CC0 A;  4HC9 A;  1R4I A;  4TNT A;  2M9W A;  2NLL A;  5GAT A;  2VUS I;  3G6U A;  1R4R A;  5EMP A;  3DZU D;  5CBY A;  3FYL A;  4GAT A;  5EMQ A;  4OND A;  4HCA A;  3GAT A;  3G9J A;  2VUT I;  6GAT A;  4CN5 A;  4HN5 A;  1KB2 A;  3G27 A;  4CN2 C;  1LAT A;  4CN3 D;  1RGD A;  7GAT A;  2A66 A;  1GAU A;  1A6Y A;  4NQA B;  1HRA A;  2DS6 A;  1LV3 A;  1R0O A;  1YNW B; 
#chains in the Genus database with same CATH homology
 4CN3 A;  4TMA I;  5CBX A;  3G6R A;  3DFX A;  3DFV C;  4HC7 A;  5L0M A;  1GNF A;  3E00 A;  2GDA A;  1HCQ A;  1KB4 A;  3G97 A;  5CBZ A;  3G9O A;  2VUU I;  3DZY D;  3VD6 C;  3G8X A;  5E6A A;  3G99 A;  1KB6 A;  4OV7 A;  1GAT A;  4HN6 A;  4OOR A;  3E00 D;  3VEK C;  1GA5 A;  3DZY A;  4OLN A;  1R4O A;  2NLL B;  3G6Q A;  2HAN B;  3CBB A;  1GLU A;  3G6T A;  1HCP A;  1CIT A;  1HLZ A;  1BY4 A;  3G9M A;  5KRB B;  5EMC A;  1GDC A;  2KAE A;  5E6B A;  5E69 A;  5E6C A;  5CC1 A;  5E6D A;  3G8U A;  2EBL A;  4IQR A;  1R0N B;  3G6P A;  1DSZ B;  2HAN A;  2FF0 A;  1YNW A;  4CN7 A;  3G9I A;  1LO1 A;  2GAT A;  3M9E A;  2ENV A;  1RXR A;  1R0N A;  1R0O B;  2C7A A;  3G9P A;  1DSZ A;  4AA6 A;  3DZU A;  5CC0 A;  4HC9 A;  1R4I A;  4TNT A;  2M9W A;  2NLL A;  5GAT A;  2VUS I;  3G6U A;  1R4R A;  5EMP A;  3DZU D;  5CBY A;  3FYL A;  4GAT A;  5EMQ A;  4OND A;  4HCA A;  3GAT A;  3G9J A;  2VUT I;  6GAT A;  4CN5 A;  4HN5 A;  1KB2 A;  4CN2 C;  1LAT A;  4CN3 D;  1RGD A;  7GAT A;  2A66 A;  1GAU A;  1A6Y A;  4NQA B;  1HRA A;  1LV3 A;  1R0O A;  1YNW B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KB6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations