The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
224
|
sequence length |
958
|
structure length |
887
|
Chain Sequence |
MMPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNSCEWEQTHVYAQAPLSGETITKSGLQIGPVYADPSYQPEPQIGESQWNEADANAAGGRVLKKTTPMKPCYGSYARPTNPFGGQSVLVLPKVDLQFFSNATKPKVVLYSEDVNMETPDTHLSYKPGKGDENSKAMLGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGIGVTDTYQAIKATTWTKDETFATRNEIGVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYNPTNVEISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGSGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKEYQQVGILHQHNNSGFVGYLAPTMREGQAYPANVPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHQPHRGVIETVYLRTPFSA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and phylogenetic analysis of adenovirus hexons by use of
high-resolution x-ray crystallographic, molecular modeling, and sequence-based
methods
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| molecule keywords |
Hexon protein
|
| total genus |
224
|
| structure length |
887
|
| sequence length |
958
|
| ec nomenclature | |
| pdb deposition date | 2003-04-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01065 | Adeno_hexon | Hexon, adenovirus major coat protein, N-terminal domain |
| A | PF03678 | Adeno_hexon_C | Hexon, adenovirus major coat protein, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon; domain 4 | Adenovirus Type 2 Hexon, domain 4 | ||
| Mainly Beta | Beta Complex | Adenovirus Type 2 Hexon; domain 1 | Adenovirus Type 2 Hexon, domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | Hexon Major Viral Coat Protein; domain 2 | Hexon Major Viral Coat Protein, domain 2 | ||
| Alpha Beta | Alpha-Beta Complex | Hexon Major Viral Coat Protein; domain 3 | Hexon Major Viral Coat Protein, domain 3 |
#chains in the Genus database with same CATH superfamily 1P2Z A; 1P30 A; 2INY A; 2OBE A; #chains in the Genus database with same CATH topology 1HX6 A; 2OBE A; 1P2Z A; 1P30 A; 1CJD A; 1HQN A; 2INY A; #chains in the Genus database with same CATH homology 1P2Z A; 1P30 A; 2INY A; 2OBE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
