1P68A

Solution structure of s-824, a de novo designed four helix bundle
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
102
structure length
102
Chain Sequence
MYGKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKHTVHHIEQNIKEIFHHLEELVHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of a de novo protein from a designed combinatorial library.
pubmed doi rcsb
molecule tags De novo protein
source organism Escherichia coli
molecule keywords De novo designed protein S-824
total genus 26
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2003-04-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1480.30 Mainly Alpha Up-down Bundle hypothetical protein mp506/mpn330, domain 1 Designed four-helix bundle protein 1p68A00
3VJFA 2JUAA 1P68A
chains in the Genus database with same CATH superfamily
1P68A 3VJFA 1V9VA 4L3UA 2JUAA 2M9XA 4GN0A 1TD6A 4CQ4A
chains in the Genus database with same CATH topology
3VJFA 2JUAA 1P68A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VJF A;  2JUA A;  1P68 A; 
#chains in the Genus database with same CATH topology
 1P68 A;  3VJF A;  1V9V A;  4L3U A;  2JUA A;  2M9X A;  4GN0 A;  1TD6 A;  4CQ4 A; 
#chains in the Genus database with same CATH homology
 3VJF A;  2JUA A;  1P68 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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