1R4O | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	80
structure length	80
Chain Sequence	MKPARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__862990759526756__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__862990759526756__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1R4O/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__862990759526756__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"862990759526756","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1R4O/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__862990759526756__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription/dna
source organism	Rattus norvegicus
publication title	Crystallographic Analysis of the Interaction of The Glucocorticoid Receptor with DNA pubmed doi rcsb
molecule keywords	5'-D(CPCPAPGPAPAPCPAPTPCPGPAPTPGPTPTPCPTP*
total genus	16
structure length	80
sequence length	80
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-10-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	1r4oA00

3DZYA 3FYLA 2VUSI 3G9MA 1YNWA 1BY4A 3G6QA 3DZUA 2NLLA 5GATA 2ENVA 2A66A 4OV7A 5CC1A 1RXRA 1GATA 3G9JA 1KB6A 1LV3A 1KB4A 2NLLB 1R0OA 5E69A 4AA6A 3GATA 4GATA 4IQRA 3E00D 1R4RA 3DFXA 6GATA 3G6RA 2VUTI 1A6YA 7GATA 3G9IA 1HCPA 2GATA 4CN3D 3G8XA 5CBYA 1DSZB 4OLNA 2EBLA 2GDAA 1YNWB 3DFVC 1GA5A 3M9EA 3VD6C 5E6CA 1KB2A 5E6DA 1CITA 1R0NA 4ONDA 4CN2C 5EMPA 1GDCA 1R4IA 1R0OB 5E6AA 4HN5A 1LO1A 3G9OA 5CC0A 1GNFA 3E00A 4HC7A 5E6BA 3G6PA 4NQAB 3DZYD 3G8UA 4TMAI 2C7AA 5CBXA 5EMCA 3DZUD 4CN3A 2KAEA 5CBZA 1LATA 4OORA 1HCQA 5EMQA 3G6TA 1RGDA 4TNTA 3G97A 4CN7A 3G9PA 5KRBB 3VEKC 2HANA 3G6UA 2M9WA 1HRAA 4HN6A 4HC9A 1HLZA 1GLUA 1GAUA 2FF0A 4CN5A 1R4OA 1R0NB 3G99A 5L0MA 2HANB 4HCAA 2VUUI 1DSZA 3CBBA
chains in the Genus database with same CATH superfamily

3DZYA 3FYLA 2VUSI 3G9MA 1YNWA 1BY4A 3G6QA 3DZUA 2NLLA 5GATA 2ENVA 2A66A 4OV7A 5CC1A 1RXRA 1GATA 3G9JA 1KB6A 1LV3A 1KB4A 2NLLB 1R0OA 5E69A 4AA6A 3GATA 4GATA 4IQRA 3E00D 1R4RA 3DFXA 2DS8A 6GATA 3G6RA 2VUTI 1A6YA 7GATA 2DS6A 3G9IA 1HCPA 2GATA 4CN3D 3G8XA 5CBYA 1DSZB 4OLNA 2EBLA 2GDAA 1YNWB 3DFVC 1GA5A 3M9EA 3VD6C 5E6CA 1KB2A 5E6DA 1CITA 1R0NA 4ONDA 4CN2C 5EMPA 1GDCA 1R4IA 1R0OB 5E6AA 4HN5A 1LO1A 3G9OA 5CC0A 1GNFA 3E00A 4HC7A 5E6BA 3G6PA 4NQAB 3DZYD 3G8UA 4TMAI 2C7AA 3G27A 5CBXA 5EMCA 3DZUD 4CN3A 2KAEA 2DS5A 5CBZA 1LATA 4OORA 1HCQA 5EMQA 3G6TA 1RGDA 4TNTA 3G97A 4CN7A 3G9PA 5KRBB 3VEKC 2HANA 3G6UA 2M9WA 1HRAA 4HN6A 4HC9A 1HLZA 1GLUA 1GAUA 2FF0A 4CN5A 1R4OA 1R0NB 3G99A 5L0MA 2HANB 4HCAA 2VUUI 1DSZA 3CBBA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3DZY A;  3FYL A;  2VUS I;  3G9M A;  1YNW A;  1BY4 A;  3G6Q A;  3DZU A;  2NLL A;  5GAT A;  2ENV A;  2A66 A;  4OV7 A;  5CC1 A;  1RXR A;  1GAT A;  3G9J A;  1KB6 A;  1LV3 A;  1KB4 A;  2NLL B;  1R0O A;  5E69 A;  4AA6 A;  3GAT A;  4GAT A;  4IQR A;  3E00 D;  1R4R A;  3DFX A;  6GAT A;  3G6R A;  2VUT I;  1A6Y A;  7GAT A;  3G9I A;  1HCP A;  2GAT A;  4CN3 D;  3G8X A;  5CBY A;  1DSZ B;  4OLN A;  2EBL A;  2GDA A;  1YNW B;  3DFV C;  1GA5 A;  3M9E A;  3VD6 C;  5E6C A;  1KB2 A;  5E6D A;  1CIT A;  1R0N A;  4OND A;  4CN2 C;  5EMP A;  1GDC A;  1R4I A;  1R0O B;  5E6A A;  4HN5 A;  1LO1 A;  3G9O A;  5CC0 A;  1GNF A;  3E00 A;  4HC7 A;  5E6B A;  3G6P A;  4NQA B;  3DZY D;  3G8U A;  4TMA I;  2C7A A;  5CBX A;  5EMC A;  3DZU D;  4CN3 A;  2KAE A;  5CBZ A;  1LAT A;  4OOR A;  1HCQ A;  5EMQ A;  3G6T A;  1RGD A;  4TNT A;  3G97 A;  4CN7 A;  3G9P A;  5KRB B;  3VEK C;  2HAN A;  3G6U A;  2M9W A;  1HRA A;  4HN6 A;  4HC9 A;  1HLZ A;  1GLU A;  1GAU A;  2FF0 A;  4CN5 A;  1R4O A;  1R0N B;  3G99 A;  5L0M A;  2HAN B;  4HCA A;  2VUU I;  1DSZ A;  3CBB A; 
#chains in the Genus database with same CATH topology
 3DZY A;  3FYL A;  2VUS I;  3G9M A;  1YNW A;  1BY4 A;  3G6Q A;  3DZU A;  2NLL A;  5GAT A;  2ENV A;  2A66 A;  4OV7 A;  5CC1 A;  1RXR A;  1GAT A;  3G9J A;  1KB6 A;  1LV3 A;  1KB4 A;  2NLL B;  1R0O A;  5E69 A;  4AA6 A;  3GAT A;  4GAT A;  4IQR A;  3E00 D;  1R4R A;  3DFX A;  2DS8 A;  6GAT A;  3G6R A;  2VUT I;  1A6Y A;  7GAT A;  2DS6 A;  3G9I A;  1HCP A;  2GAT A;  4CN3 D;  3G8X A;  5CBY A;  1DSZ B;  4OLN A;  2EBL A;  2GDA A;  1YNW B;  3DFV C;  1GA5 A;  3M9E A;  3VD6 C;  5E6C A;  1KB2 A;  5E6D A;  1CIT A;  1R0N A;  4OND A;  4CN2 C;  5EMP A;  1GDC A;  1R4I A;  1R0O B;  5E6A A;  4HN5 A;  1LO1 A;  3G9O A;  5CC0 A;  1GNF A;  3E00 A;  4HC7 A;  5E6B A;  3G6P A;  4NQA B;  3DZY D;  3G8U A;  4TMA I;  2C7A A;  3G27 A;  5CBX A;  5EMC A;  3DZU D;  4CN3 A;  2KAE A;  2DS5 A;  5CBZ A;  1LAT A;  4OOR A;  1HCQ A;  5EMQ A;  3G6T A;  1RGD A;  4TNT A;  3G97 A;  4CN7 A;  3G9P A;  5KRB B;  3VEK C;  2HAN A;  3G6U A;  2M9W A;  1HRA A;  4HN6 A;  4HC9 A;  1HLZ A;  1GLU A;  1GAU A;  2FF0 A;  4CN5 A;  1R4O A;  1R0N B;  3G99 A;  5L0M A;  2HAN B;  4HCA A;  2VUU I;  1DSZ A;  3CBB A; 
#chains in the Genus database with same CATH homology
 3DZY A;  3FYL A;  2VUS I;  3G9M A;  1YNW A;  1BY4 A;  3G6Q A;  3DZU A;  2NLL A;  5GAT A;  2ENV A;  2A66 A;  4OV7 A;  5CC1 A;  1RXR A;  1GAT A;  3G9J A;  1KB6 A;  1LV3 A;  1KB4 A;  2NLL B;  1R0O A;  5E69 A;  4AA6 A;  3GAT A;  4GAT A;  4IQR A;  3E00 D;  1R4R A;  3DFX A;  6GAT A;  3G6R A;  2VUT I;  1A6Y A;  7GAT A;  3G9I A;  1HCP A;  2GAT A;  4CN3 D;  3G8X A;  5CBY A;  1DSZ B;  4OLN A;  2EBL A;  2GDA A;  1YNW B;  3DFV C;  1GA5 A;  3M9E A;  3VD6 C;  5E6C A;  1KB2 A;  5E6D A;  1CIT A;  1R0N A;  4OND A;  4CN2 C;  5EMP A;  1GDC A;  1R4I A;  1R0O B;  5E6A A;  4HN5 A;  1LO1 A;  3G9O A;  5CC0 A;  1GNF A;  3E00 A;  4HC7 A;  5E6B A;  3G6P A;  4NQA B;  3DZY D;  3G8U A;  4TMA I;  2C7A A;  5CBX A;  5EMC A;  3DZU D;  4CN3 A;  2KAE A;  5CBZ A;  1LAT A;  4OOR A;  1HCQ A;  5EMQ A;  3G6T A;  1RGD A;  4TNT A;  3G97 A;  4CN7 A;  3G9P A;  5KRB B;  3VEK C;  2HAN A;  3G6U A;  2M9W A;  1HRA A;  4HN6 A;  4HC9 A;  1HLZ A;  1GLU A;  1GAU A;  2FF0 A;  4CN5 A;  1R4O A;  1R0N B;  3G99 A;  5L0M A;  2HAN B;  4HCA A;  2VUU I;  1DSZ A;  3CBB A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1R4OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization