1SGL | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	206
structure length	206
Chain Sequence	EFDYFILALQWAGTSCRSGGACCPYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGGSFDPDEIMPFFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLVQKLSLCFDKDFKPRDCVQVGSCPRYVSLPEIPD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfc03659d7e7f0b0e889fee/pdb.gz): 1133 ms

reading 206 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

206 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 22 ms

Adding embedded #jmolscript: select ({0:205});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
publication title	The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease. pubmed doi rcsb
molecule keywords	trichomaglin
total genus	51
structure length	206
sequence length	206
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2004-02-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00445	Ribonuclease_T2	Ribonuclease T2 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.730.10	Alpha Beta	Alpha-Beta Complex	Ribonuclease Rh; Chain A	Ribonuclease T2-like	1sglA00

1IQQA 1VCZA 2PQYA 1BK7A 4DVLA 1JY5A 3T0OA 1J1FA 4DW3A 1BOLA 4DW4A 4DWAA 4DVNA 4DWCA 1IYBA 4DVKA 1UCGA 3TBJA 1IOOA 1UCAA 2Z70A 1SGLA 1DIXA 2PQXA 4DW5A 1J1GA 1VD3A 1VD1A 1V9HA 1UCDA 1UCCA 4DW7A 3D3ZA 2EA1A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1IQQ A;  1VCZ A;  2PQY A;  1BK7 A;  4DVL A;  1JY5 A;  3T0O A;  1J1F A;  4DW3 A;  1BOL A;  4DW4 A;  4DWA A;  4DVN A;  4DWC A;  1IYB A;  4DVK A;  1UCG A;  3TBJ A;  1IOO A;  1UCA A;  2Z70 A;  1SGL A;  1DIX A;  2PQX A;  4DW5 A;  1J1G A;  1VD3 A;  1VD1 A;  1V9H A;  1UCD A;  1UCC A;  4DW7 A;  3D3Z A;  2EA1 A; 
#chains in the Genus database with same CATH topology
 1IQQ A;  1VCZ A;  2PQY A;  1BK7 A;  4DVL A;  1JY5 A;  3T0O A;  1J1F A;  4DW3 A;  1BOL A;  4DW4 A;  4DWA A;  4DVN A;  4DWC A;  1IYB A;  4DVK A;  1UCG A;  3TBJ A;  1IOO A;  1UCA A;  2Z70 A;  1SGL A;  1DIX A;  2PQX A;  4DW5 A;  1J1G A;  1VD3 A;  1VD1 A;  1V9H A;  1UCD A;  1UCC A;  4DW7 A;  3D3Z A;  2EA1 A; 
#chains in the Genus database with same CATH homology
 1IQQ A;  1VCZ A;  2PQY A;  1BK7 A;  4DVL A;  1JY5 A;  3T0O A;  1J1F A;  4DW3 A;  1BOL A;  4DW4 A;  4DWA A;  4DVN A;  4DWC A;  1IYB A;  4DVK A;  1UCG A;  3TBJ A;  1IOO A;  1UCA A;  2Z70 A;  1SGL A;  1DIX A;  2PQX A;  4DW5 A;  1J1G A;  1VD3 A;  1VD1 A;  1V9H A;  1UCD A;  1UCC A;  4DW7 A;  3D3Z A;  2EA1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SGLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations